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rotary-genomics / spokewrench

Toolkit for manipulating circular DNA sequence elements
BSD 3-Clause "New" or "Revised" License
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Add --keep_temp_files option #21

Closed jmtsuji closed 1 week ago

jmtsuji commented 1 week ago

For development and testing of the stitch module, it's helpful to be able to access some intermediate files produced by the repair module. This PR adds a keep_temp_files option to the repair module. Adding this flag to a repair command ensures that intermediate files are retained.

@LeeBergstrand Mind giving a quick review? Thanks!

LeeBergstrand commented 1 week ago

For development and testing of the stitch module, it's helpful to be able to access some intermediate files produced by the repair module. This PR adds a keep_temp_files option to the repair module. Adding this flag to a repair command ensures that intermediate files are retained.

@LeeBergstrand Mind giving a quick review? Thanks!

@jmtsuji Looks good to me. Feel free to merge!

jmtsuji commented 1 week ago

@LeeBergstrand Thanks!