Custom Conformal Shimming Calibration and Computation Tool for GE3T MRI Scanner
Navigate to the directory and install the required packages
$ cd <path/to/shimTool>
$ pip install -r requirements.txt
Install / setup the pre-commit hooks
$ pre-commit install
Now when you commit, the pre-commit hooks will run and lint your code before you push. If you want to run the hooks manually, refer to https://pre-commit.com/#install or use pre-commit run --all-files
There is provided a configsTemplate.json
. Copy this file with the name configs.json
, and adjust the contents to be dependent on personal preferences and scanner setup. The passwords / host ids are generally common for the GE Nspire
Launch the tool. Use --no-gui
to launch the tool in a python CLI or use --quiet
to silence most of the logging and output.
$ python -i src/main.py [--no-gui] [--quiet]
look at src/examples
to see some examples of how to start and some basic usage of the exsi client on its own in both a jupyter notebook or a python script. If you want deeper details, look into the exsi_client.py
code to see more about which commands and exsi operations are supported (essentially all the useful ones...)