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rreybeyb / MoAIMS

Efficient software for detection of enriched regions of MeRIP-Seq
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Issue with Fit Models #10

Closed priyankasharma145 closed 2 months ago

priyankasharma145 commented 2 months ago

HI there, I am using MoAIMS for my m6a data analysis. I got the following error while using my samples as well as test data provided by the authors:

Fit models.

Error in crossprod(rV %*% t(db.drho)) : "crossprod" is not a BUILTIN function In addition: Warning message: In .get_cds_IDX(mcols0$type, mcols0$phase) : The "phase" metadata column contains non-NA values for features of type stop_codon. This information was ignored.

Could anyone please help me? Also i have a query about the use of gtf file. I am using genecode gtf file. Can we use refgene.gtf also? Do we need to map out sequences with the genome indexed with same gtf file?

priyankasharma145 commented 2 months ago

Got solved with R4.1.