rrsg2020 analysis issues

rrsg2020 / analysis

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Future idea: compare averaging the T1 values fitted per voxel vs averaging the voxels then fitting the mean

#44 mathieuboudreau opened 1 year ago
0
Bug in Jupyter Notebook 08

#43 mathieuboudreau opened 1 year ago
2
Merge mb/plot changes into master

#42 mathieuboudreau closed 1 year ago
0
Bump certifi from 2020.6.20 to 2022.12.7

#41 dependabot[bot] opened 1 year ago
0
Bump pillow from 7.1.2 to 9.3.0

#40 dependabot[bot] closed 1 year ago
1
Add inter-implentation CoV calculation

#39 mathieuboudreau opened 1 year ago
1
Bump numpy from 1.19.0 to 1.22.0

#38 dependabot[bot] closed 1 year ago
1
Bump pillow from 7.1.2 to 9.0.1

#37 dependabot[bot] closed 1 year ago
1
Bump pillow from 7.1.2 to 9.0.0

#36 dependabot[bot] closed 2 years ago
1
Bump pillow from 7.1.2 to 8.3.2

#35 dependabot[bot] closed 2 years ago
1
Update configs & database to clear the 0.35T dataset from the 3T files, add temperature corrected notebooks, and regenerate all figures

#34 mathieuboudreau closed 3 years ago
0
To do: sort out the 0.35 T dataset out of the 3T folder/config files/figures

#33 mathieuboudreau opened 3 years ago
0
Fix labels in 20200207_jorgejovicich_cimec_human where deep GM was mislabeled as cortical GM

#32 mathieuboudreau closed 3 years ago
0
Implement fixes in database

#31 mathieuboudreau closed 3 years ago
0
Bump pillow from 7.1.2 to 8.2.0

#30 dependabot[bot] closed 3 years ago
1
Bump urllib3 from 1.25.9 to 1.26.5

#29 dependabot[bot] opened 3 years ago
0
Temperature correction for SN<42

#28 jvelazquez-reyes closed 3 years ago
0
Temperature correction for SN<42

#27 jvelazquez-reyes closed 3 years ago
1
NIST Temperature correction: feature only available for SN >= 42 & documentation

#26 mathieuboudreau opened 3 years ago
7
Fix leading zeros in serial numbers of one dataset

#25 mathieuboudreau closed 3 years ago
0
Bug: leading zeros of phantom serial number in one dataset YAML leads to changed value in JSON

#24 mathieuboudreau closed 3 years ago
0
Bump pillow from 7.1.2 to 8.1.1

#23 dependabot[bot] closed 3 years ago
1
Manually correct a few outlier ROI masks

#22 mathieuboudreau closed 3 years ago
0
Stats: Question 3

#21 mathieuboudreau opened 3 years ago
1
Stats: Question 2

#20 mathieuboudreau opened 3 years ago
9
Stats: Question 1

#19 mathieuboudreau opened 3 years ago
0
Refactor tests

#18 mathieuboudreau closed 3 years ago
2
Temp correction

#17 jvelazquez-reyes closed 3 years ago
5
Statistical analyses

#16 mathieuboudreau opened 3 years ago
8
Add initial set of plots

#15 mathieuboudreau closed 4 years ago
0
Registration pipeline: Upload NIST code used for creating ROI/Mask templates, and/or convert to python and integrate in pipeline

#14 mathieuboudreau opened 4 years ago
0
Registration pipeline: handle case where only complex data is available

#13 mathieuboudreau opened 4 years ago
1
Registration pipeline: add feature that automatically copies the magnitude roi masks and renames to the accompanying complex masks

#12 mathieuboudreau opened 4 years ago
0
Add NIST database template (no ROI values yet, will fill when #10 is completed and merged)

#11 mathieuboudreau closed 4 years ago
0
Register NIST phantom data to ROI for subsequent quantification

#10 jcohenadad closed 4 years ago
26
Add dockerfile for Database building & analysis

#9 mathieuboudreau closed 4 years ago
0
Add database generation tools

#8 mathieuboudreau closed 4 years ago
0
Inconsistent label name: 20200302_wang_MDAnderson_day1_NIST_Magnitude_labels.nii.gz

#7 jcohenadad closed 4 years ago
2
Improved inter-site registration for the NIST data

#6 jcohenadad closed 4 years ago
22
Updated link to gifmaker in register_t1maps_nist.sh

#5 jcohenadad closed 4 years ago
0
Add MyBinder badge to README

#4 mathieuboudreau closed 4 years ago
0
Add Dockerfile (ANTs+FSL)

#3 mathieuboudreau closed 4 years ago
0
Added script to co-register t1maps

#2 jcohenadad closed 4 years ago
13
Registration of phantom & human datasets, and ROIs.

#1 mathieuboudreau closed 4 years ago
33