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riboxyz
htpps://ribosome.xyz
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Cluster HMM fasta seed seq repos and verify that outliers are indeed phylogenetic in origin.
#26
rtviii
opened
1 year ago
0
Cap HMM best hits at evalue of -20e and score of 100+
#25
rtviii
closed
1 year ago
1
Make `rnas`, `factors` non-`Optional` in `ribosome_types`, get rid of `other`. Refactor object hierarchy
#24
rtviii
closed
1 year ago
0
Look at `pyhmmer.Plan7` to see if polymer classes HMMs can be all queried at once to minimize IO
#23
rtviii
closed
1 year ago
0
Make sure the `taxonomic_correction` to the dynamic `HMM`s produces models with same number of seed sequences
#22
rtviii
opened
1 year ago
0
Replace all `Literal`s with `Enum`-style impls in `ribosome_types`
#21
rtviii
closed
1 year ago
1
Removed `ProDy` dep and rewrote HMM classifier to open the road forward for Factors, RNA and tRNA
#20
rtviii
closed
1 year ago
0
get rid of `ProDy` dependency
#19
rtviii
closed
1 year ago
1
Make the `ribctl` accept unix pipes
#18
rtviii
closed
5 months ago
0
Github actions to sync with PDB and redeploy
#17
rtviii
opened
1 year ago
0
Migrate to `pydantic` 2.0.0
#16
rtviii
closed
6 months ago
3
Replace pymol with chimerax asap
#15
rtviii
closed
5 months ago
2
Factor `ribctl` package out and implement hmm-based classification for rproteins
#14
rtviii
closed
1 year ago
1
Merge branch 'tunnel-blockage-extraction'
#13
rtviii
closed
1 year ago
0
Tunnel blockage extraction
#12
rtviii
closed
1 year ago
0
db-inejest pipeline
#11
rtviii
closed
1 year ago
0
Typegen works
#10
rtviii
closed
1 year ago
0
Deleted old cli, added templates, before creating backwards-compt endpoitns
#9
rtviii
closed
1 year ago
0
Commit code rewritten in neo4j driver
#8
rtviii
closed
1 year ago
0
rib logic as a python package
#7
rtviii
closed
1 year ago
0
before trying vm
#6
rtviii
closed
1 year ago
0
Django state coalescing
#5
rtviii
closed
1 year ago
0
Oclif ingress
#4
rtviii
closed
1 year ago
0
Merge pull request #2 from rtviii/ingress-pymol-out
#3
rtviii
closed
1 year ago
1
merging pymol stuff into main
#2
rtviii
closed
1 year ago
1
Oclif ingress
#1
rtviii
closed
1 year ago
1
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