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rtviii / riboxyz

htpps://ribosome.xyz
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cryoem hidden-markov-model mmcif pdb ribosome structural-biology types

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Riboxyz Logo

riboxyz (available at https://ribosome.xyz) is a package and a database application that provides organized access to ribosome structures, with several tools for visualisation and study. The database is up-to-date with the Protein Data Bank (PDB), provides a standardized nomenclature to ribosomal components:

  • cytosolic and mitochondrial proteins
  • cytosolic and mitochondrial rRNA
  • tRNA
  • elongation, initiation, termination factors (archaeal, bacterial and eukaryotic)
Paper: A comprehensive database for visualizing and analyzing ribosome structures