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saccharis
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SACCHARIS_2
CLI and GUI based bioinformatics pipeline to automate phylogenetic analysis of CAZyme families in FASTA sequences.
GNU General Public License v3.0
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Save screened fasta file family counts based on hash
#18
AlexSCFraser
opened
1 month ago
0
Generate CLI command from GUI
#17
AlexSCFraser
opened
1 month ago
0
Alternate sequence download sources
#16
AlexSCFraser
opened
1 month ago
0
Alternative clustering methods
#15
AlexSCFraser
opened
1 month ago
0
Add signalp analysis?
#14
AlexSCFraser
opened
1 month ago
0
Annotate largest monophyletic clade with single function that seqs belong to
#13
AlexSCFraser
opened
1 month ago
0
"None" option for family to skip cazy download, make tree from only user seqs
#12
AlexSCFraser
opened
1 month ago
0
Add outgroup protein(s) to tree via fasta file
#11
AlexSCFraser
opened
1 month ago
0
Better windows support
#10
AlexSCFraser
opened
1 month ago
0
Update dbCAN dependency to v4
#9
AlexSCFraser
opened
1 month ago
0
Add genome via genbank accession
#8
AlexSCFraser
opened
1 month ago
0
Error parsing sequence files
#7
lowkri
opened
3 months ago
1
No output created
#6
jzrapp
opened
4 months ago
8
No dbCAN HMM database found
#5
JoelPHoward
closed
3 months ago
6
bug report
#4
Isharma
opened
10 months ago
0
Databases downloaded to home directory
#3
sivankij
closed
1 month ago
2
changing git details
#1
AlexSCFraser
closed
1 year ago
0