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saezlab
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decoupler-py
Python package to perform enrichment analysis from omics data.
https://decoupler-py.readthedocs.io/
GNU General Public License v3.0
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decoupler.plot_barplot ax
#104
annita-louloupi
closed
6 months ago
3
Flag for sorting of gene names
#103
leoTiez
closed
7 months ago
4
Loading resources for mouse is not working
#102
riederd
closed
6 months ago
9
run_ora_df
#101
mcjmigdal
closed
8 months ago
2
Fix formatting
#100
Zethson
closed
8 months ago
1
Limiting usage of cores or threads
#99
racng
closed
9 months ago
2
Announcement: some Galaxy modules for some decoupler functionalities
#97
pcm32
closed
9 months ago
1
Tutorial clustermap changed to Marsilea
#96
shuang1330
closed
7 months ago
2
dc.get_collectri() does not work
#95
FADHLyemen
closed
10 months ago
2
Functional PB Tutorial fails at dc.plot_associations
#94
jan-engelmann
closed
9 months ago
5
ValueError: Invalid value `loops` for `InteractionsQuery` in dc.get_collectri()
#93
GERMAN00VP
closed
10 months ago
2
dc.get_progeny(organism = 'mouse') fails with ImportError
#92
riederd
closed
10 months ago
5
Get gene markers used to annotate the cell type
#91
ryrl9703
closed
9 months ago
2
Method dc.run_gsva error
#90
chuiqin
closed
10 months ago
2
Pseudobulk for each sample
#89
SNOL2
closed
10 months ago
2
method run_gsea() error : SystemError: CPUDispatcher(<function nb_gsea at 0x7f7477d3b9c0>) returned a result with an exception set
#88
nicolas-zimmermann
closed
10 months ago
6
shuffle_net output not random
#87
IBMB-MFP
closed
10 months ago
1
Error downlaoding progeny model for mouse species
#86
archanabhardwaj
closed
10 months ago
3
Problems running decoupleR with Compressed Sparse Column (csc) count matrix
#85
vckraemer
closed
11 months ago
2
Switching to conda forge
#84
wxicu
closed
7 months ago
7
use of the run_gsva method : format of the net argument
#83
nicolas-zimmermann
closed
11 months ago
1
Module request: UCell signatures
#82
pcm32
closed
12 months ago
2
shuffle_nets function produces networks with repeated edges
#81
IBMB-MFP
closed
11 months ago
1
Differential expression error in pseudo-bulk step
#80
dfermin
closed
11 months ago
4
removes dtype from anndata
#79
Intron7
closed
1 year ago
1
get_metadata_associations - TypeError: data type 'category' not understood
#78
ttszen
closed
11 months ago
7
Using decoupler to implement Cytosig analysis
#77
SNOL2
closed
1 year ago
2
How does run_aucell receive the gene signatures?
#76
pcm32
closed
1 year ago
1
A recommendation for prior network preprocessing based on expression data
#75
janursa
closed
1 year ago
7
Changed minimal possible value for min_counts to zero
#74
Claptar
closed
1 year ago
0
Clipping of `min_counts` in `get_pseudobulk`
#73
Claptar
closed
10 months ago
4
Error when using get_collectri, but not get_dorothea
#72
ken-chen-18
closed
1 year ago
6
dc.get_collectri and dc.get_dorothea fails with errors in the Google Colab
#71
hengkp
closed
1 year ago
6
Adds seaborn to dependencies
#70
pcm32
closed
1 year ago
1
Shouldn't decoupler require seaborn as a dependency?
#69
pcm32
closed
1 year ago
2
Input for bulk analysis when dealing with batch effet
#68
merlevede
closed
1 year ago
5
run_aucell extracts the features from adata.var.index implicitly without any option to change this
#67
radutanasa
closed
1 year ago
2
Include unique identifiers for GO terms?
#66
brainfo
closed
1 year ago
4
dc.run_mlm() and dc.get_gsea_df()
#65
dyinboisry4u
closed
1 year ago
1
ValueError: Invalid value `loops` for `InteractionsQuery`.
#64
janursa
closed
1 year ago
4
Editing plots using matplotlib
#63
alpha-1-centauri
closed
1 year ago
2
Updated benchmark to remove NAs in activities
#62
smuellerd
closed
1 year ago
0
Check other options besides csr_matrix in check_X inside get_pseudobulk
#61
roramirezf
closed
1 year ago
4
updated docs
#60
robinfallegger
closed
1 year ago
0
Regarding the function 'get_metadata_association'
#59
Phil-Momoka
closed
1 year ago
4
association between embeddings and sample metadata using simple anova model
#58
robinfallegger
closed
1 year ago
0
Pseudobulk looses some samples
#57
grst
closed
1 year ago
2
run_ora using adata as the input
#56
biopzhang
closed
3 months ago
3
Error importing decoupler library in python
#55
aimorenov-owkin
closed
1 year ago
4
dc.get_resource("MSigDB", organism = "mouse") fails with errors in pypath
#54
Christian-Heyer
closed
1 year ago
4
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