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saezlab
/
liana
LIANA: a LIgand-receptor ANalysis frAmework
https://saezlab.github.io/liana/
GNU General Public License v3.0
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Installation
#73
haripazhayath
closed
1 year ago
3
Ordering interactions on liana_dotplot
#72
clb94
closed
1 year ago
3
Object 'homologene_download' is not exported by 'namespace:OmnipathR'
#71
ZheFrench
closed
1 year ago
1
Update pkgdown site to bootstrap 5
#70
deeenes
closed
1 year ago
0
Integrated Seurat datasets
#69
AltayYuzeir
closed
1 year ago
2
"call_cellchat" meet a error
#68
AIBio
closed
1 year ago
2
merge /w gh
#67
dbdimitrov
closed
1 year ago
0
Integrated Cytotalk method error: non-numeric argument to numeric function
#66
AltayYuzeir
closed
1 year ago
20
rlang invoke deprecated
#65
BenjaminDEMAILLE
closed
1 year ago
3
LIANA for bulk RNA seq?
#64
alhadjil
closed
1 year ago
1
Error in "auto_copy()"
#63
AltayYuzeir
closed
1 year ago
8
CellPhoneDB cannot finish running
#62
AltayYuzeir
closed
1 year ago
2
Running `liana::liana_aggregate()` on a multi-method output produces a byproduct `omnipath-log` folder in the current working environment.
#61
enblacar
closed
1 year ago
3
Issues with Visium Dataset
#60
rishilpatel77
closed
1 year ago
1
How to do Differential CCC analysis?
#59
fbnrst
closed
1 year ago
2
Something error when qsub tasks in linux
#58
YYYYYWWWYYYYYY
closed
1 year ago
2
Parallelization
#57
BenjaminDEMAILLE
closed
1 year ago
1
installation error related to Cairo
#56
fbnrst
closed
1 year ago
7
weird error
#55
rachel662
closed
1 year ago
17
Using LIANA /w CellChatDB murine resource
#54
dbdimitrov
closed
1 year ago
1
Can liana do the analysis for Spatial Transcriptomics data?
#53
bitcometz
closed
2 years ago
2
Bad credentials
#51
joe-jhou2
closed
2 years ago
4
Filtering for secreted ligands
#50
c-felton
closed
2 years ago
2
liana_dotplot magnitude and specificity argument syntax
#49
mschmidt22
closed
2 years ago
2
chord_freq plot question
#48
akiss-me
closed
1 year ago
13
Specificity and magnitude columns across methods.
#47
enblacar
closed
2 years ago
7
Error in method(object) : all assays must have the same nrow and ncol
#46
joe-jhou2
closed
2 years ago
3
Interpretation of Odds Ratio
#45
ebasto
closed
2 years ago
1
L-R not shown
#44
MarcElosua
closed
2 years ago
10
Dependencies
#43
emily-003
closed
2 years ago
8
CCC strength between cell pairs on non-specific aggregate + magnitude
#42
dbdimitrov
closed
1 year ago
0
Docker version of liana
#41
bitcometz
closed
2 years ago
4
Error in loading LIANA
#40
absrmzhr
closed
2 years ago
0
Too many p-values of 0?
#39
austinv11
closed
2 years ago
10
Issue with scconnect
#38
austinv11
closed
2 years ago
2
P-Value Interpretation Question
#37
austinv11
closed
2 years ago
2
call_cellchat trouble with liana_aggregate?
#36
austinv11
closed
2 years ago
2
fixing error: DESCRIPTION malformed
#35
linusbiostat
closed
2 years ago
1
Vizualization options
#34
FrancescaLodi
closed
2 years ago
4
Errors from running liana_wrap with call_cellchat
#33
SBaek613
closed
2 years ago
9
Comparing Results across conditions?
#32
austinv11
closed
1 year ago
18
Error in coercing to CsparseMatrix when running with SingleCellExperiment
#31
alejoaa
closed
2 years ago
2
how can liana be applied to mouse dataset?
#30
Wulin-Tan
closed
2 years ago
3
some interactions identified by Liana are not present in the cust_omni tibble obtained after running generate_omni
#29
paulyashna
closed
2 years ago
10
pass seurat argument to LIANA wrap function
#28
yjgeno
closed
1 year ago
7
Mouse data?
#27
the6science
closed
2 years ago
1
LIANA over Seurat/Non-Seurat data
#26
GreenGilad
closed
2 years ago
7
Fail to run LIANA tutorial
#25
GreenGilad
closed
2 years ago
10
New 'cytotalk' implementation error
#24
Projectnix
closed
2 years ago
4
Use of LIANA with a different species
#23
Goultard59
closed
2 years ago
3
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