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saezlab
/
omnipath
Python client for the OmniPath web service
https://omnipath.readthedocs.io
MIT License
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6
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Incompatibility of ``pybiomart`` and ``omnipath``
#54
PauBadiaM
closed
6 months ago
3
Programmatically fix database version downloaded
#53
bednarsky
opened
6 months ago
0
Collectri issue with loops
#52
dbdimitrov
closed
9 months ago
2
Open position in the development of omnipath / pypath / biocypher
#51
iulusoy
closed
7 months ago
2
Networking issue around package load manifests as a param validation error
#50
yulicarp
closed
12 months ago
14
How to get data on the interactions of all receptor ligands?
#49
qijt123
closed
1 year ago
1
Fix/tests
#48
michalk8
closed
1 year ago
1
Query on change in number of interactions
#47
Tama-sha
closed
1 year ago
2
dc.get_resource('PanglaoDB') error
#46
zhaleh-safikhani
closed
1 year ago
1
omnipath support for python3.11?
#45
benwilks
closed
1 year ago
0
TypeError: read_csv() got an unexpected keyword argument 'squeeze'
#44
shreyaslabh
closed
1 year ago
1
Uniprot IDs to Gene symbols
#43
Coaasim
closed
11 months ago
6
Orthology conversion via homologene
#42
dbdimitrov
closed
1 year ago
2
get_resource MSigDB fails with read_csv() error due to unexpected argument 'squeeze'
#41
pcm32
closed
1 year ago
1
Fix/pandas-read
#40
michalk8
closed
1 year ago
0
TypeError: read_csv() got an unexpected keyword argument 'squeeze'
#39
slobentanzer
closed
1 year ago
1
omnipath throwing error perhaps because of new pandas version?
#38
LLehner
closed
1 year ago
0
Add annotations to network data frames
#37
deeenes
opened
1 year ago
0
Support for custom interaction attributes
#36
deeenes
opened
1 year ago
0
"ChunkedEncodingError" when running dc.get_resource('MSigDB')
#35
alexandregrimaldi
closed
11 months ago
1
RetryError when run get_resource(‘MSigDB’)
#34
ChangLu92
closed
1 year ago
2
Issues downloading annotation resources
#32
PauBadiaM
closed
1 year ago
1
Fix badges
#31
michalk8
closed
1 year ago
1
How can I verify pathways linked to a specific ligand/receptor or protein/protein interaction?
#30
mgrantpeters
closed
11 months ago
1
Feature/update ci
#29
michalk8
closed
1 year ago
1
Release current version?
#28
simonvh
closed
1 year ago
5
Conda package
#27
LuckyMD
closed
1 year ago
2
source, target, ligand and receptor
#26
wangjiawen2013
closed
11 months ago
1
omnipath connection on Amazon web service and my PC
#25
sophieRAIBAUD
closed
11 months ago
5
Meaning behind "consensus_direction"
#24
pokedthefrog
closed
1 year ago
7
set species
#23
wangjiawen2013
closed
11 months ago
2
Add "small_molecule" as valid interaction dataset
#22
pokedthefrog
closed
2 years ago
1
Copy new intercell related procedures from the R package
#21
deeenes
opened
2 years ago
0
Question: interactions erroneously reversed in some cases?
#20
sjfleming
closed
11 months ago
8
fix for #18
#19
TheAustinator
closed
2 years ago
2
Downloader urllib3.util.Retry `allowed_methods` arg causes TypeError: __init__() got an unexpected keyword argument 'allowed_methods'
#18
TheAustinator
closed
2 years ago
2
omnipath tutorials
#17
wangjiawen2013
opened
2 years ago
3
Interaction annotations by pair, not individual genes
#16
dnjst
closed
11 months ago
2
Pivot annotations
#15
deeenes
closed
2 years ago
0
Update release notes, CI, add badge
#14
michalk8
closed
3 years ago
1
Remove enum tools
#13
michalk8
closed
3 years ago
1
Run Omnipath on a VM
#12
DriessenA
closed
3 years ago
1
Some resources not included in last Omnipath version?
#11
Jordi-Valls
closed
3 years ago
3
Fix writing empty values in cache
#10
michalk8
closed
3 years ago
0
Update ci
#9
michalk8
closed
3 years ago
1
Error when importing omnipath?
#8
jadeshi
closed
3 years ago
1
Empty values shouldn't be saved to cache and there should be an option to bypass or overwrite the cache
#7
dbdimitrov
closed
3 years ago
0
RecursionError: maximum recursion depth exceeded" error when calling interactions.PostTranslational.get()
#6
olbeimarton
closed
3 years ago
1
Add post trans (#5)
#5
michalk8
closed
3 years ago
0
Add post trans
#4
michalk8
closed
3 years ago
0
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