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sagnikbanerjee15
/
Finder
A fully automated gene annotator from RNA-Seq expression data
MIT License
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Distant exon prediction
#83
Maxim-Karpov
opened
6 months ago
2
Wrong XA format and combined/psiclass_output_vote.gtf': No such file or directory
#82
Dalhte
opened
11 months ago
1
example output files
#81
dpuiu0
opened
1 year ago
1
Finder does not find files (supposed to be) generated at earlier steps...
#80
lefterov
opened
1 year ago
5
Finder on PacBio data
#79
WietseHR
opened
1 year ago
3
Unable to find combined.gtf file
#78
bimbim1803
opened
1 year ago
2
error with example file
#77
theokirkland
opened
1 year ago
1
codan fails and kills pipeline due to finding duplicate key(s)
#76
laurabaxter21
opened
1 year ago
4
Finder generates no files and fails
#75
ereyred
opened
1 year ago
1
push
#74
sagnikbanerjee15
closed
1 year ago
0
Finder2 snb dev dockerfiles cwl tools
#73
sagnikbanerjee15
closed
1 year ago
0
Finder2 programs
#72
sagnikbanerjee15
closed
1 year ago
0
Issues during checkpoints 2/3
#71
Maxim-Karpov
opened
1 year ago
2
Assembly issues, no combined gff file
#70
mardal42
opened
1 year ago
1
Singularity still calling docker
#69
fiddlinwill
opened
1 year ago
1
SRA Toolkit update for prefork and fastq-dump
#68
wesleyemason
opened
1 year ago
1
Adding "bare" option to the framework choice
#67
deniskristak
closed
1 year ago
2
I got gm_key_64.gz from the site
#66
angus821
opened
1 year ago
3
Finder test issue
#65
tomh1lll
opened
2 years ago
2
avoiding docker and singularity
#64
deniskristak
opened
2 years ago
4
CDS frame in output
#63
LarsGab
closed
2 years ago
2
Singularity error: "destination must be an absolute path"
#62
claumer
opened
2 years ago
1
docker: Error response from daemon: Duplicate mount point:
#61
takeiga
opened
2 years ago
2
metadata file and soft masking
#60
ardy20
opened
2 years ago
5
How to install via Conda
#59
ardy20
opened
2 years ago
5
Finder Stops Running during psi class assembly
#58
hopehealey
opened
2 years ago
2
[error]docker: invalid reference format: repository name must be lowercase
#57
ShailNair
opened
2 years ago
2
Update Dockerfile
#56
MicroSeq
closed
1 year ago
0
gz process
#55
wyim-pgl
opened
2 years ago
1
Unable to run example
#54
kataksk
opened
2 years ago
1
really long introns create a problem with gffread
#53
jkreplak
opened
2 years ago
4
error when downloading docker image
#52
yz42
opened
2 years ago
1
Not stranded annotation on the final GTF file
#51
vccarneiro
opened
2 years ago
1
Are all those .sam mandatory ?
#50
jkreplak
opened
2 years ago
1
Help check legit of Finder for report in University
#49
trungnl08
closed
2 years ago
1
Psiclass fault
#48
vruggieri
closed
2 years ago
4
Genome examples empty?
#47
paul-bio
opened
2 years ago
18
Issue running Finder
#46
nousiaso
opened
2 years ago
5
Output files not always containing CDS filed
#45
vccarneiro
opened
2 years ago
3
cds_predict error
#44
claumer
opened
2 years ago
5
dummy_data file issue - Singularity
#43
njm-data
opened
2 years ago
7
Finder v1.1.0
#42
sagnikbanerjee15
closed
2 years ago
0
Low BUSCO stats
#41
skyungyong
opened
2 years ago
2
Unable to load modules
#40
skyungyong
closed
2 years ago
2
Why the busco scores for the annotated example arabidopsis thaliana genome proteins are very low ?
#39
bioinformaticspcj
opened
2 years ago
3
RNAseq file name
#38
vccarneiro
closed
2 years ago
9
Finder failed to analy
#37
jb018
opened
2 years ago
10
Error: "finder: Argument list too long"
#36
vccarneiro
opened
2 years ago
12
Will this error affect final results?
#35
xiekunwhy
opened
3 years ago
1
Several bug I found
#34
ZuyaoLiu
closed
2 years ago
1
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