Pneumonia segmentation model for CT scans. To be used in the context of covid-19 studies.
prp-gpu-1.t2.ucsd.edu
machineIf you are instead on the AiDA-2
machine, replace each instance below of /xilinx/scratch/software/miniconda3/
with /home/miniconda/miniconda3/
Add the following lines to ~/.bashrc
:
# >>> conda initialize >>>
# !! Contents within this block are managed by 'conda init' !!
__conda_setup="$('/xilinx/scratch/software/miniconda3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
if [ $? -eq 0 ]; then
eval "$__conda_setup"
else
if [ -f "/xilinx/scratch/software/miniconda3/etc/profile.d/conda.sh" ]; then
. "/xilinx/scratch/software/miniconda3/etc/profile.d/conda.sh"
else
export PATH="/xilinx/scratch/software/miniconda3/bin:$PATH"
fi
fi
unset __conda_setup
# <<< conda initialize <<<
mkdir ~/.conda
Create a file ~/.conda/environments.txt
and add these lines:
/xilinx/scratch/software/miniconda3
/xilinx/scratch/software/miniconda3/envs/tensorflow
source ~/.bashrc
conda activate tensorflow