sanger-pathogens ariba issues

sanger-pathogens / ariba

Antimicrobial Resistance Identification By Assembly

http://sanger-pathogens.github.io/ariba/

Other

167 stars 53 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Summarising MLST reports?

#292 wanyuac closed 4 years ago
1
Simple question: Can you use assemblies with ariba?

#291 slvrshot closed 3 years ago
0
Summary ignores one gene

#290 GonzaloYebra opened 4 years ago
0
Update CARD citation message

#289 fmaguire closed 4 years ago
1
Correct swapped col and row filters

#288 antunderwood closed 4 years ago
0
Reference dataset of megares cannot be downloaded

#287 sgonzalezbodi closed 4 years ago
3
Remove support information

#286 kpepper closed 4 years ago
0
Problem interpreting 'gene' + 'var_only' columns

#285 ghost opened 4 years ago
1
CARD 3.0.6 introduces white space in seq id causing fasta/metadata mismatch

#284 rpetit3 closed 4 years ago
2
Are the variant IDs in Summary result comparable When 2 isolates that match to same cluster, but their closest references are different

#283 KuangXY3 opened 5 years ago
0
Fixed GitHub issue #281 - ARG-ANNOT Fails to Download

#282 kpepper closed 5 years ago
0
ARGannot download fails

#281 gkapatai closed 5 years ago
2
Added default locale to docker file

#280 kpepper closed 5 years ago
0
Fix for issue #278 Version 3.0.3 of CARD breaks prepareref

#279 kpepper closed 5 years ago
1
Version 3.0.3 of CARD breaks prepareref

#278 JezSw closed 5 years ago
9
Remove extra matplotlib entry in install_requires

#277 andersgs closed 5 years ago
1
Removed the specific Ariba release number from the docker file

#276 kpepper closed 5 years ago
0
matplotlib listed twice as a dep in setup.py

#275 andersgs closed 5 years ago
2
RT 660940 - add spades to docker file

#274 kpepper closed 5 years ago
0
v2.14.1 attributeError: 'Namespace' object has no attribute 'cdhit_max_memory'

#273 Coldheart79 closed 5 years ago
5
Added AUTHORS and LICENSE to the manifest

#272 kpepper closed 5 years ago
0
Backed out MANIFEST.in change. Bumped release number to v2.14.1.

#271 kpepper closed 5 years ago
0
Additional v2.14.0 updates

#270 kpepper closed 5 years ago
0
Added getref feature for NCBI's Bacterial Antimicrobial Resistance Reference Gene Database

#269 schultzm closed 5 years ago
4
Understanding ARIBA report.tsv file

#268 JFsanchezherrero opened 5 years ago
0
Reason for pymummer<=0.10.3 ?

#267 tseemann opened 5 years ago
2
Try to understand the report column 27 and 29

#266 pixuenan opened 5 years ago
1
Reference dataset of ARG-ANNOT cannot be downloaded

#265 pixuenan closed 5 years ago
0
unable to download mlst schemes

#264 samlipworth closed 5 years ago
2
Issue with ariba and slurm (signal 18, signal 20)

#263 kimleeng closed 5 years ago
2
Use ariba run for several isolates in batch

#262 BaMagalhaes closed 5 years ago
2
Several "At least one cluster failed!Stopping..." errors

#261 BaMagalhaes closed 5 years ago
11
Updated CHANGELOG.md

#260 kpepper closed 5 years ago
0
Bump version to 2.13.5 and fix Spades invocation issue

#259 kpepper closed 5 years ago
0
Minor code change to mitigate issue #245 (installation failure)

#258 kpepper closed 5 years ago
0
Rebuilt CHANGELOG for v2.13.4

#257 kpepper closed 5 years ago
0
Allow increasing cd-hit-est memory allocation #255

#256 kpepper closed 5 years ago
0
Allow increasing cd-hit-est memory allocation

#255 simonrharris closed 5 years ago
2
Cannot determine MLST type when gene not present

#254 heidikira opened 5 years ago
0
stop codons and wild card changes

#253 ulfschaefer opened 5 years ago
0
Ariba run signal 28

#252 mweberr closed 5 years ago
1
TB D94A fix

#251 martinghunt closed 5 years ago
0
Update tb panel

#250 martinghunt closed 5 years ago
0
Also getting Stopping! Signal received: 13

#249 Siacm closed 5 years ago
2
Added changelog

#248 ssjunnebo closed 5 years ago
0
Update python min version

#247 ssjunnebo closed 5 years ago
0
Question about ariba summary

#246 ssjunnebo opened 5 years ago
3
Installation failed: clang: error: linker command failed with exit code 1 (use -v to see invocation)

#245 abrozzi closed 5 years ago
5
Include tb_data dir in release

#244 martinghunt closed 5 years ago
0
Resfinder linebreaks

#243 martinghunt closed 5 years ago
0

Previous Next