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sanjaynagi / AnoPrimer

Primer Design in Anopheles gambiae and funestus considering genetic variation
https://sanjaynagi.github.io/AnoPrimer/
MIT License
2 stars 4 forks source link
anopheles cloud malaria-genomics primer-design primer3-py vector-control

readme

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Primer design in Anopheles gambiae s.l and funestus taking into account SNP variation in primer binding sites, using primer3-py and malariagen_data. Supports genomic DNA primers, cDNA primers and hybridisation probes:

Documentation: https://sanjaynagi.github.io/AnoPrimer/ [![Custom badge](https://img.shields.io/endpoint?color=white&logo=Google%20Colab&url=https%3A%2F%2Fraw.githubusercontent.com%2Fsanjaynagi%2FAnoPrimer%2Fmain%2Fgraphics%2Fbadge.json)](https://colab.research.google.com/github/sanjaynagi/AnoPrimer/blob/main/notebooks/AnoPrimer-long.ipynb) [![Custom badge](https://img.shields.io/endpoint?color=red&logo=Google%20Colab&url=https%3A%2F%2Fraw.githubusercontent.com%2Fsanjaynagi%2FAnoPrimer%2Fmain%2Fgraphics%2Fbadge-short.json)](https://colab.research.google.com/github/sanjaynagi/AnoPrimer/blob/main/notebooks/AnoPrimer-short.ipynb)