Probe is a snakemake workflow to apply a range of population genomic analyses to whole genome sequencing data, in any diploid organism. Data can be supplied in VCF or Zarr format, or An. gambiae s.l data can be accessed directly in the cloud through the malariagen_data API. Called SNPs should be of high confidence, although a site filter mask can additionally be applied.
The workflow is a WIP, most modules are functional but nothing can be guaranteed :P