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sanketx / mitochondria_segmentation

Semi-supervised 3D segmentation of mitochondria in CryoET data
MIT License
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Micromamba installation #2

Open hamid13r opened 6 months ago

hamid13r commented 6 months ago

Hi, I am trying to install mito_seg on our computer but our institution blocks access to anaconda. This means I need to install all packages using micromamba. This generally isn't a problem, however, I cannot find the equivalent of conda develop src for micromamba.

Here is the conda env info:

        environment : mito_seg (active)
        env location : /home/janlevinson/micromamba/envs/mito_seg
      user config files : /home/janlevinson/.mambarc
 populated config files : 
       libmamba version : 1.3.1
       micromamba version : 1.3.1
       curl version : libcurl/7.87.0 OpenSSL/3.0.8 zlib/1.2.13 libssh2/1.10.0 nghttp2/1.47.0
     libarchive version : libarchive 3.6.2 zlib/1.2.13 bz2lib/1.0.8 libzstd/1.5.2
       virtual packages : __unix=0=0
                          __linux=6.5.0=0
                          __glibc=2.35=0
                          __archspec=1=x86_64
                          __cuda=12.0=0
               channels : 
               base environment : /home/janlevinson/micromamba
               platform : linux-64