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sassoftware / clinical-standards-toolkit

The open source release of SAS Clinical Standards Toolkit is a direct port of the last production release with minor modifications to adapt to a new deployment architecture.
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Installing CST in SAS EG #8

Open YDangPMC opened 1 year ago

YDangPMC commented 1 year ago

Hello, I'm trying to install the open source CST to use in SAS EG. I've installed Apache ANT and downloaded the v1.7.5 release package. In the config.properties file (C:\Program Files\SASHome\SASStudioSingleUser\3.8\war\config), I've added the following.

---SAS Clinical Standards toolkit

SET CSTHOME C:Users\Y.D.Dang_pc\Documents\SAS CST\cstFrameworkLibrary CSTGLOBALLIB C:Users\Y.D.Dang_pc\Documents\SAS CST\cstGlobalLibrary CSTSAMPLELIB C:Users\Y.D.Dang_pc\Documents\SAS CST\cstSampleLibrary insert sasautos '!CSTHOME/macros' JREOPTIONS (-Dsas.app.class.dirs=!CSTHOME/jar) SET CLASSPATH !CSTHOME/jar

I'm currently however unable to run any of the programs. E.g. if I run cstvalidate I'm getting the following message: WARNING: Apparent symbolic reference _CST_RC not resolved. ERROR: A character operand was found in the %EVAL function or %IF condition where a numeric operand is required. The condition was: &_cst_rc ERROR: The macro CSTVALIDATE will stop executing.

1) Is the config file the correct one as I'm using SAS EG. 2) If correct should I add a '-' before each line. E.g. -SET CSTHOME.... ( It is originally added in the txt file in sctFrameworklibrary) 3) I'm not able to stop server. Is it automatically stopped if I close SAS EG? A local server on my machine is used. 4) Any other points that I've missed that might cause these errors?

Thanks, Yen

michaelkilhullen commented 1 year ago

I'm not sure about EG configurations but I did notice that your paths are missing a slash: C:Users... should be C:\Users...

YDangPMC commented 1 year ago

Thanks, But it's still not working. I've added the slash and an include to run the cstFramework programs and initialized the global macro variables, But I'm still getting a fatal error in cstvalidate and several libraries can not be found.

Added in SAS program: %include "C:\Users\Y.D.Dang_pc\Documents\SAS CST\cstFrameworkLibrary\macros*.sas";

/ initialize the global macro variables needed by the framework / Options macrogen symbolgen mlogic mprint mfile; %cst_setstandardproperties( _cstStandard=CST-FRAMEWORK ,_cstSubType=initialize ); / initialize the global macro variables needed by CDISC SDTM / ..............

Part of SAS log: 27 /%include "C:\cstFrameworkLibrary\macros*.sas";/ 28 /%include "C:\Users\Y.D.Dang_pc\Documents\SAS CST\cstFrameworkLibrary\macros\cstvalidate.sas";/ 29 %include "C:\Users\Y.D.Dang_pc\Documents\SAS CST\cstFrameworkLibrary\macros*.sas"; MLOGIC(CSTVALIDATE): Beginning execution. MLOGIC(CSTVALIDATE): Parameter _CSTCALLINGPGM has value Unspecified MLOGIC(CSTVALIDATE): Parameter _CSTREPORTOVERRIDE has value N SYMBOLGEN: Macro variable _CST_RC resolves to 1 MLOGIC(CSTVALIDATE): %IF condition &_cst_rc is TRUE MLOGIC(CSTVALIDATE): %PUT ****

MLOGIC(CSTVALIDATE): %PUT ERROR: Fatal error encountered, validation process cannot start. ERROR: Fatal error encountered, validation process cannot start.

..............

MPRINT(CSTUTIL_CREATETEMPMESSAGES): set _cst5154.standards (where=( (upcase(standard)="CST-FRAMEWORK") AND (upcase(isStandardDefault)="Y") )); ERROR: Library _CST5154 does not exist. ...........

MPRINT(CSTUTIL_CREATETEMPMESSAGES): * Include the generated code; SYMBOLGEN: Macro variable _CSTNEXTCODE resolves to _cst0371 ERROR: Catalog WORK._CST0371 does not exist. ERROR: Cannot open %INCLUDE file _CST0371.

michaelkilhullen commented 1 year ago

let's start by seeing what's actually defined in your SAS session for CST. Start your SAS session and run this code.

%put %sysget(CSTHOME); %put %sysget(CLASSPATH);

proc options option=cstgloballib option=cstsamplelib option=sasautos option=jreoptions; run;

YDangPMC commented 1 year ago

Below the log. It doesn't seem like adding the set statements to the properties config file worked.

25 GOPTIONS ACCESSIBLE; WARNING: The argument to macro function %SYSGET is not defined as a system variable. 26 %put %sysget(CSTHOME);

27 %put %sysget(CLASSPATH); WARNING: The argument to macro function %SYSGET is not defined as a system variable.

28
29
30
31 proc options 32 option=cstgloballib 33 option=cstsamplelib 34 option=sasautos 35 option=jreoptions; 36 run;

SAS (r) Proprietary Software Release 9.4  TS1M6

CSTGLOBALLIB= Specifies the location of the SAS Clinical Standards Toolkit global library. CSTSAMPLELIB= Specifies the location of the SAS Clinical Standards Toolkit sample library. SASAUTOS=SASAUTOS Specifies the location of one or more autocall libraries. JREOPTIONS=( -DPFS_TEMPLATE=C:\Program Files\SASHome\SASFoundation\9.4\tkjava\sasmisc\qrpfstpt.xml
-Djava.class.path=C:\PROGRA~1\SASHome\SASVER~1\eclipse\plugins\SASLAU~1.JAR -Djava.security.auth.login.config=C:\Program Files\SASHome\SASFoundation\9.4\tkjava\sasmisc\sas.login.config -Djava.security.policy=C:\Program Files\SASHome\SASFoundation\9.4\tkjava\sasmisc\sas.policy -Djava.system.class.loader=com.sas.app.AppClassLoader
-Dlog4j.configuration=file:/C:/Program%20Files/SASHome/SASFoundation/9.4/tkjava/sasmisc/sas.log4j.properties
-Dsas.app.class.path=C:\PROGRA~1\SASHome\SASVER~1\eclipse\plugins\tkjava.jar -Dsas.ext.config=C:\Program Files\SASHome\SASFoundation\9.4\tkjava\sasmisc\sas.java.ext.config
-Dsas.jre.libjvm=C:\PROGRA~1\SASHome\SASPRI~1\9.4\jre\bin\server\jvm.dll
-Dtkj.app.launch.config=C:\PROGRA~1\SASHome\SASVER~1\picklist -Xms128m -Xmx128m ) Specifies the Java Runtime Environment options for SAS.

michaelkilhullen commented 1 year ago

You need to add the CST config statements to the SAS configuration file. SASHOME/SASFoundation/9.4/nls/en/sasv9.cfg.

YDangPMC commented 1 year ago

I've addit to the sasV9 file, but I get the same result. If I add csthome and classpath in windows as system environment variables I do get a path for csthome and classpath, but the cstgloballib and cstsamplelib are still empty.

Added in sasv9.cfg: / This is the ANSI character set (for SAS Monospace font and ANSI Sasfont) / -FORMCHAR '82838485868788898A8B8C2B3D7C2D2F5C3C3E2A'x

-CSTGLOBALLIB C:\Users\Y.D.Dang_pc\Documents\SAS CST\cstGlobalLibrary -CSTSAMPLELIB C:\Users\Y.D.Dang_pc\Documents\SAS CST\cstSampleLibrary -insert sasautos '!CSTHOME/macros' -JREOPTIONS (-Dsas.app.class.dirs=!CSTHOME/jar) /---------------------------------------------------------------\ | WARNING: INSTALL Application edits below this line. User | | options should be added above this box comment. | | INSTALL Application maintains and modifies the | | following options; -SASAUTOS, -SASHELP, -SASMSG, | | -PATH, and -MAPS. It also maintains and modifies | | the following CONFIG variables with the -SET option; | | INSTALL, USAGE, LIBRARY, SAMPSIO, SAMPSRC, SASCBT, | | and SASEXT01-SASEXT50. It preserves all lines above | | the line containing 'DO NOT EDIT BELOW THIS LINE'. | ---------------------------------------------------------------/

/ DO NOT EDIT BELOW THIS LINE - INSTALL Application edits below this line / / /

SAS log: 25 GOPTIONS ACCESSIBLE; 26 %put %sysget(CSTHOME); C:\Users\Y.D.Dang_pc\Documents\SAS CST\cstFrameworkLibrary 27 %put %sysget(CLASSPATH); C:\Users\Y.D.Dang_pc\Documents\SAS CST\jar 28
29 proc options 30 option=cstgloballib 31 option=cstsamplelib 32 option=sasautos 33 option=jreoptions; 34 run;

SAS (r) Proprietary Software Release 9.4  TS1M6

CSTGLOBALLIB= Specifies the location of the SAS Clinical Standards Toolkit global library. CSTSAMPLELIB= Specifies the location of the SAS Clinical Standards Toolkit sample library. SASAUTOS=SASAUTOS Specifies the location of one or more autocall libraries. JREOPTIONS=( -DPFS_TEMPLATE=C:\Program Files\SASHome\SASFoundation\9.4\tkjava\sasmisc\qrpfstpt.xml
-Djava.class.path=C:\PROGRA~1\SASHome\SASVER~1\eclipse\plugins\SASLAU~1.JAR -Djava.security.auth.login.config=C:\Program Files\SASHome\SASFoundation\9.4\tkjava\sasmisc\sas.login.config -Djava.security.policy=C:\Program Files\SASHome\SASFoundation\9.4\tkjava\sasmisc\sas.policy -Djava.system.class.loader=com.sas.app.AppClassLoader
-Dlog4j.configuration=file:/C:/Program%20Files/SASHome/SASFoundation/9.4/tkjava/sasmisc/sas.log4j.properties
-Dsas.app.class.path=C:\PROGRA~1\SASHome\SASVER~1\eclipse\plugins\tkjava.jar -Dsas.ext.config=C:\Program Files\SASHome\SASFoundation\9.4\tkjava\sasmisc\sas.java.ext.config
-Dsas.jre.libjvm=C:\PROGRA~1\SASHome\SASPRI~1\9.4\jre\bin\server\jvm.dll
-Dtkj.app.launch.config=C:\PROGRA~1\SASHome\SASVER~1\picklist -Xms128m -Xmx128m ) Specifies the Java Runtime Environment options for SAS.

YDangPMC commented 1 year ago

Maybe of additional note I use the sasv9.cfg in the u8 file. In the C:\Program Files\SASHome\SASFoundation\9.4\sasv9.csf file I've specified: -config "C:\Program Files\SASHome\SASFoundation\9.4\nls\u8\sasv9.cfg" instead of 'en' But if I add the config statements to the u8 sasv9.cfg file then I get an error 'A connection to the server could not be established'.