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satijalab
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sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
GNU General Public License v3.0
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SCTransform
#41
MQMQ2018
closed
4 years ago
8
Scaledata() scales/centers each row instead of column?
#40
jliu678
closed
5 years ago
3
Lines 429-430 in vst.R
#39
oscar-franzen
closed
5 years ago
1
Inclusion of variable not to regress out
#38
kvittingseerup
opened
5 years ago
2
Sctransform dosen't normalizes gene length? (solved)
#37
jliu678
closed
5 years ago
0
"umi_corrected" vs original umi in function "sctransform::correct"
#36
jliu678
opened
5 years ago
3
applying to non-UMI data - update?
#35
AnnaLaddach
closed
3 years ago
4
Question about Reproducing a Plot in the Paper Introducing the SCTransform (Hafemeister, C., & Satija, R.)
#34
sainadfensi
closed
3 years ago
2
dealing with low quality cell
#33
MichaelPeibo
closed
5 years ago
2
scTransform with multiple samples in each batch
#32
alextamburino
closed
5 years ago
3
Grouped analysis (integration, differential gene expression)
#31
MaxKman
closed
3 years ago
4
Error in base::tcrossprod(x, y)
#30
klprint
closed
4 years ago
6
row_var function error
#29
Jincheng2009
closed
4 years ago
1
alevin non-integer count data
#28
alexvpickering
closed
4 years ago
3
SCTransform - Loss of genes
#27
TobiTekath
closed
5 years ago
3
Does SCTransform Normalize Sequencing Depth Between Samples?
#26
stephenchea
closed
5 years ago
1
Warning message in theta.ml(y = y, mu = fit$fitted)
#25
jkanbar
closed
5 years ago
2
return_gene_attr = TRUE parameter causes error
#24
alorchhota
closed
4 years ago
11
Do the residuals follow any distribution?
#23
mochar
closed
5 years ago
2
Avoid removing outliers
#22
sunanthas9
closed
5 years ago
1
latent variable issues
#21
kohlkopf
closed
5 years ago
1
installation issue
#20
ghost
closed
5 years ago
1
Unexpected loss of genes
#19
kohlkopf
closed
5 years ago
2
Question: Regress for nUMI or not?
#18
romanhaa
closed
5 years ago
1
Manual transformation of the 'data' slot to 'scale.data'
#17
roosheelpatel
closed
5 years ago
3
Error in data.frame size
#16
jennychien8
closed
5 years ago
2
SCTransform not found
#15
SalimMegat
closed
5 years ago
6
Input Error
#14
FTD2018
closed
5 years ago
3
Cannot allocate vector of size XX Gb
#13
schultzmattd
closed
5 years ago
6
futures implementation error
#12
roosheelpatel
closed
5 years ago
2
ERCC Spike-Ins
#11
jasenjackson
closed
5 years ago
1
applying to non-UMI data
#10
igordot
closed
5 years ago
2
Question: FindIntegrationAnchors, scale = FALSE?
#9
lima1
closed
5 years ago
1
vars.to.regress Error in qr.resid
#8
dpcook
closed
5 years ago
8
batch_var error
#7
mk1859
closed
5 years ago
1
swap in future framework for mclapply
#6
andrewwbutler
closed
5 years ago
0
UMAP error upon specifying min.features in SCTransform pipeline
#5
aemoor
closed
5 years ago
6
work flow for integrated data
#4
KoichiHashikawa
closed
5 years ago
9
sctransform in the context of an Integration workflow
#3
roosheelpatel
closed
5 years ago
3
SCTransform raises a vague error
#2
GrigoriiNos
closed
5 years ago
10
Error in asMethod(object)
#1
AMA111
closed
5 years ago
5
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