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sbslee
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fuc
Frequently used commands in bioinformatics
https://sbslee-fuc.readthedocs.io
MIT License
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UnboundLocalError: local variable 'columns' referenced before assignment
#73
Bo-UT
opened
1 month ago
2
0.38.0 dev
#72
sbslee
closed
3 months ago
0
[General] `common.plot_cytobands` and matplotlib 3.9.0 deprecation
#71
theAeon
closed
3 months ago
1
Tutorial to read in 10 vcfs and calculate allele frequency?
#70
dbolser
opened
6 months ago
0
0.37.0 dev
#69
sbslee
closed
1 year ago
0
[MAF] Update Ensembl VEP consequences mapping
#68
brianryu87
closed
1 year ago
3
[MAF] Variant color coding mismatch
#67
tilschaef
closed
1 year ago
3
0.36.0 dev
#66
sbslee
closed
2 years ago
0
0.35.0 dev
#65
sbslee
closed
2 years ago
0
0.34.0 dev
#64
sbslee
closed
2 years ago
0
[VCF] Question on usage
#63
ironb25
closed
2 years ago
7
[VCF] Issue reading vcf from mutect2, strelka2
#62
ironb25
closed
2 years ago
2
[MAF/VCF] `pymaf.MafFrame.from_vcf` assumes CSQ is the first field in the INFO record
#61
lbeltrame
closed
2 years ago
3
0.33.1 dev
#60
sbslee
closed
2 years ago
0
0.32.0 dev
#59
sbslee
closed
2 years ago
0
[MAF] maf-oncoplt Index Error
#58
dmontielg
closed
2 years ago
3
[VCF] Update `pyvcf.VcfFrame.filter_sampnum` to be more robust
#57
sbslee
closed
2 years ago
1
0.31.0 dev
#56
sbslee
closed
2 years ago
0
[General] Error while importing pyvcf
#55
evabalini
closed
2 years ago
2
[VCF] Add function to remove samples with high missingness
#54
sbslee
closed
2 years ago
0
[VCF] Add function to compute AC/AN/AF in the INFO column
#53
sbslee
closed
2 years ago
1
[General] Error during installation fuc via conda
#52
emoranska
closed
2 years ago
2
0.30.0 dev
#51
sbslee
closed
2 years ago
0
0.29.0 dev
#50
sbslee
closed
2 years ago
0
0.28.0 dev
#49
sbslee
closed
2 years ago
0
[VCF] Add function to create a scatter plot of allele frequency for two datasets
#48
sbslee
closed
2 years ago
1
0.27.0 dev
#47
sbslee
closed
2 years ago
0
[VCF] How to remove all rows with the same variant in VCF file using `pyvcf`
#46
emoranska
closed
2 years ago
10
0.26.0 dev
#45
sbslee
closed
2 years ago
0
0.25.0 dev
#44
sbslee
closed
2 years ago
0
0.24.0 dev
#43
sbslee
closed
2 years ago
0
0.23.0 dev
#42
sbslee
closed
2 years ago
0
0.22.0 dev
#41
sbslee
closed
3 years ago
0
0.21.0 dev
#40
sbslee
closed
3 years ago
0
[VCF] Error related to `pyvcf.VcfFrame.plot_hist`
#39
ghost
closed
3 years ago
11
[VCF] Add function to convert 23andMe data to VCF
#38
sbslee
opened
3 years ago
0
0.20.0 dev
#37
sbslee
closed
3 years ago
0
[VCF] Add function to plot summary statistics
#36
sbslee
opened
3 years ago
1
0.19.0 dev
#35
sbslee
closed
3 years ago
0
[BAM] Add function to plot uniformity in read depth
#34
sbslee
closed
3 years ago
0
0.18.0 dev
#33
sbslee
closed
3 years ago
0
[VCF] Add function to convert missing genotypes (./.) to REF homozygous (0/0)
#32
sbslee
closed
3 years ago
0
0.17.0 dev
#31
sbslee
closed
3 years ago
0
[MAF/VCF] Add function to create rainfall plots
#30
sbslee
closed
3 years ago
1
0.16.0 dev
#29
sbslee
closed
3 years ago
0
[MAF/VCF] Add function to convert unannotated VCF to MAF
#28
sbslee
closed
3 years ago
1
[VCF] Add function to find intersection between VCF files
#27
sbslee
opened
3 years ago
1
0.15.0 dev
#26
sbslee
closed
3 years ago
0
0.14.0 dev
#25
sbslee
closed
3 years ago
0
[VCF] Add function to remove duplicate records
#24
sbslee
closed
3 years ago
1
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