fastcore-rs

Rust re-implementation of navis and nat core functions.

TO-DOs

• [x] geodesic distances
• [x] connected components
• [x] generation of linear segments
• [x] synapse flow centrality
• [x] Strahler index
• [x] classify nodes
• [ ] flow centrality
• [ ] CI tests
• [ ] NBLAST (started a prototype)
• [ ] shortest paths
• [ ] cater for i32 node IDs which are currently cast up to i64
• [ ] faster version of navis.connected_subgraph

Additional Notes

• internally, we use i32 to represent node indices which means we can't process neurons with more than 2,147,483,647 nodes (should be fine though)

Usage

See the README for the navis and nat wrappers for instructions on installation and usage.