issues
search
schneebergerlab
/
plotsr
Tool to plot synteny and structural rearrangements between genomes
MIT License
282
stars
28
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Readability of marker text
#88
buchanri
opened
3 days ago
1
How to plot large deletions region?
#87
paraunie
opened
1 week ago
1
Center-align
#86
JaneYang123
opened
3 weeks ago
0
alternative for syri
#85
onbio
opened
1 month ago
2
Multiple genomes are aligned to the same genome
#84
MinjaYuan
opened
2 months ago
1
why there are two kinds of line in the tracks related to gene density?
#83
futurefanzhang
closed
2 months ago
2
How can I add DIY Annotation Legend?
#82
linyuiz
closed
3 months ago
0
Code improvements
#81
hyBio
closed
4 months ago
2
Is there a way to compare mutiple assemblies to a reference genome?
#80
mariaelf97
closed
4 months ago
10
list index out of range
#79
zhangyixing3
closed
4 months ago
2
Order plot
#78
fergsc
closed
4 months ago
2
How to set parameters to avoid the problem of incomplete start and end display？
#77
felixlee0608
closed
3 months ago
1
--nosyn didnt work
#76
jurin0811
closed
3 months ago
1
zoom problem with unequal chromosome lengths?
#75
KewinOgink
closed
6 months ago
1
Labels to the left of each assembly
#74
scottcain
closed
5 months ago
2
Getting pixel coordinates/feature relationships/building an imagemap
#73
scottcain
opened
10 months ago
3
bug: marker and chromosome position coordinates become wrong
#72
KewinOgink
closed
11 months ago
2
Plotting chromosome fusion
#71
kashiff007
closed
10 months ago
2
ImportError: For chromosome ID: Hic3, length in genome fasta: genome.txt is less than the maximum coordinate in the structural annotation file: syri.out. Exiting.
#70
wangguiqian
closed
6 months ago
1
Set chromosome length axis
#69
annerilotter
closed
5 months ago
4
ValueError when running plotsr function
#68
ngorringe
closed
1 year ago
2
How is track height determined?
#67
KewinOgink
closed
5 months ago
4
ValueError: tt is not a valid tag
#66
hushaoqiang
closed
1 year ago
2
cannot plot all the information from syri.out file
#65
Hemaprasanth24
closed
1 year ago
6
Can i plot the centromere region?
#64
lly1214
closed
1 year ago
1
Only the SNPs are being displayed
#63
hedy-ella
closed
1 year ago
8
tracks error
#62
Hemaprasanth24
closed
1 year ago
2
Question about output
#61
mylena-s
closed
1 year ago
1
colour to non-aligned region
#60
mnshgl0110
closed
1 year ago
5
Installation issue following recommended installation instructions
#59
smorzechowski
closed
1 year ago
1
Error with marker specification
#58
mylena-s
closed
1 year ago
3
Chromosome ID not present in genome fasta
#57
adriandrr
closed
1 year ago
2
Sizes between inversions do not correspond across the genome
#56
JAEYOONSUNG
closed
1 year ago
6
Error in genomes.txt
#55
mnshgl0110
closed
1 year ago
4
A running problem about two genomes with relatively large size differences (~850M vs ~650M)
#54
Wenwen012345
closed
1 year ago
3
possible bug for tracks: all chromosomes need to be in the track list
#53
KewinOgink
closed
1 year ago
11
Error while reading GFF file
#52
mnshgl0110
opened
1 year ago
7
Straight Line instead curve line between genes
#51
awesomedeer
closed
1 year ago
2
Problem with the track file
#50
m-bogaerts
closed
1 year ago
3
index out of range while reading syri output
#49
mnshgl0110
closed
1 year ago
1
Custom alignment colors do not show
#48
lgozasht
closed
1 year ago
2
Is it possible to visualize all SyRI SVTYPEs?
#47
KewinOgink
closed
1 year ago
1
syntenic links have no color
#46
Zefeng-Wu
closed
1 year ago
2
plotrs -R doesn't work
#45
YingLiPUMC
closed
1 year ago
2
feature suggestion: using different shades of color to show sequence identity differences across different homologous blocks
#44
yjx1217
closed
1 year ago
3
the 'genome_id' in markers.bed
#43
iehfdshgkjzh
closed
6 months ago
3
Plot feature tracks for the query genomes as well?
#42
yjx1217
closed
1 year ago
2
Customizing the color code used for representing different input genomes
#41
yjx1217
closed
1 year ago
2
error while trying to add track
#40
ylevmirom
closed
1 year ago
11
Error importing pysam.
#39
bijendrabio
closed
1 year ago
3
Next