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schneebergerlab
/
plotsr
Tool to plot synteny and structural rearrangements between genomes
MIT License
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use for protein sequences
#38
LandiMi2
closed
3 months ago
2
How to get high-definition pictures
#37
zhoudreames
closed
1 year ago
1
Getting exact coordinates in an inversion/insertion region in a chromosome
#36
LandiMi2
closed
1 year ago
5
Is it possible to use plotsr in local assembly?
#35
kendaida
closed
1 year ago
1
Feature request: option to not bin and not rescale bedgraph tracks
#34
jnmaloof
opened
2 years ago
4
Allow float values in bedgraph file
#33
jnmaloof
closed
2 years ago
0
Error in README
#32
jnmaloof
closed
2 years ago
1
the parameter --reg can not show Translocation
#31
aaannaw
closed
2 years ago
2
track - ERROR
#30
YuChrming
closed
1 year ago
1
Adding gene annotation without mRNA in gff
#29
sandain
closed
2 years ago
2
problems with adding track layers
#28
HegedusB
closed
2 years ago
2
Number of re-arrangement
#27
Karimi-81
closed
2 years ago
1
Thank you very much for your help!
#26
Li-280512
closed
2 years ago
0
Mark contigs
#25
Li-280512
closed
2 years ago
7
error while trying to plot an assembly and a reference
#24
josruirod
closed
1 year ago
4
[question] how to add a gene track as displayed in the 'introduction'?
#23
JWDebler
closed
5 months ago
4
skip blank lines
#22
z-spider
closed
2 years ago
3
Can we plot two annotation tracks?
#21
minalj365
closed
2 years ago
6
Plotting coverage track
#20
shreygandhi1990
closed
2 years ago
2
Can I use plotsr to visualize multiple human genomes with known SVs?
#19
calhoujd
closed
2 years ago
4
Font error when running example
#18
pspealman
closed
2 years ago
5
PAF input
#17
ekg
closed
2 years ago
1
plotting chromosomes with global synteny and large rearrangements
#16
lassancejm
closed
2 years ago
1
how do I set the line width of homologous block
#15
jxlabWzZ
closed
5 months ago
2
Possible to plot two different chromosomes?
#14
ahishsujay
opened
2 years ago
5
Can I remove the dotted line of the coordinate axis
#13
zhoudreames
closed
2 years ago
5
plot two alignments
#12
xbarvazx
closed
2 years ago
2
Errors running 3 way genome comparison
#11
annerilotter
closed
2 years ago
11
question about duplication
#10
StefanoLonardi
closed
2 years ago
1
Errors when using plotsr with more than 10 genomes
#9
Chenglin20170390
closed
2 years ago
5
plot haplotype resolved genome by plotsr
#8
Chenglin20170390
closed
2 years ago
2
bug when zooming into a large inversion at the very beginning of a chromosome
#7
StefanoLonardi
closed
2 years ago
4
Possible issue with GFF import?
#6
naturepoker
closed
2 years ago
1
Visualizing the comparison between two haplotypes and --notr or --nodup didn't work
#5
Yutang-ETH
closed
2 years ago
3
readsyriout - WARNING
#4
Yutang-ETH
closed
2 years ago
1
Plot genes in tracks without structural annotation?
#3
kushalsuryamohan
closed
2 years ago
1
Plotting gene annotation track without counting in bins
#2
markcharder
closed
2 years ago
2
String error in log statement
#1
mnshgl0110
closed
2 years ago
2
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