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schneebergerlab
/
plotsr
Tool to plot synteny and structural rearrangements between genomes
MIT License
288
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28
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Readability of marker text
#88
buchanri
opened
2 weeks ago
1
How to plot large deletions region?
#87
paraunie
opened
3 weeks ago
1
Center-align
#86
JaneYang123
opened
1 month ago
0
alternative for syri
#85
onbio
opened
2 months ago
2
Multiple genomes are aligned to the same genome
#84
MinjaYuan
opened
3 months ago
1
why there are two kinds of line in the tracks related to gene density?
#83
futurefanzhang
closed
3 months ago
2
How can I add DIY Annotation Legend?
#82
linyuiz
closed
4 months ago
0
Code improvements
#81
hyBio
closed
4 months ago
2
Is there a way to compare mutiple assemblies to a reference genome?
#80
mariaelf97
closed
5 months ago
10
list index out of range
#79
zhangyixing3
closed
5 months ago
2
Order plot
#78
fergsc
closed
5 months ago
2
How to set parameters to avoid the problem of incomplete start and end display？
#77
felixlee0608
closed
3 months ago
1
--nosyn didnt work
#76
jurin0811
closed
3 months ago
1
zoom problem with unequal chromosome lengths?
#75
KewinOgink
closed
6 months ago
1
Labels to the left of each assembly
#74
scottcain
closed
6 months ago
2
Getting pixel coordinates/feature relationships/building an imagemap
#73
scottcain
opened
10 months ago
3
bug: marker and chromosome position coordinates become wrong
#72
KewinOgink
closed
1 year ago
2
Plotting chromosome fusion
#71
kashiff007
closed
10 months ago
2
ImportError: For chromosome ID: Hic3, length in genome fasta: genome.txt is less than the maximum coordinate in the structural annotation file: syri.out. Exiting.
#70
wangguiqian
closed
7 months ago
1
Set chromosome length axis
#69
annerilotter
closed
6 months ago
4
ValueError when running plotsr function
#68
ngorringe
closed
1 year ago
2
How is track height determined?
#67
KewinOgink
closed
6 months ago
4
ValueError: tt is not a valid tag
#66
hushaoqiang
closed
1 year ago
2
cannot plot all the information from syri.out file
#65
Hemaprasanth24
closed
1 year ago
6
Can i plot the centromere region?
#64
lly1214
closed
1 year ago
1
Only the SNPs are being displayed
#63
hedy-ella
closed
1 year ago
8
tracks error
#62
Hemaprasanth24
closed
1 year ago
2
Question about output
#61
mylena-s
closed
1 year ago
1
colour to non-aligned region
#60
mnshgl0110
closed
1 year ago
5
Installation issue following recommended installation instructions
#59
smorzechowski
closed
1 year ago
1
Error with marker specification
#58
mylena-s
closed
1 year ago
3
Chromosome ID not present in genome fasta
#57
adriandrr
closed
1 year ago
2
Sizes between inversions do not correspond across the genome
#56
JAEYOONSUNG
closed
1 year ago
6
Error in genomes.txt
#55
mnshgl0110
closed
1 year ago
4
A running problem about two genomes with relatively large size differences (~850M vs ~650M)
#54
Wenwen012345
closed
1 year ago
3
possible bug for tracks: all chromosomes need to be in the track list
#53
KewinOgink
closed
1 year ago
11
Error while reading GFF file
#52
mnshgl0110
opened
1 year ago
7
Straight Line instead curve line between genes
#51
awesomedeer
closed
1 year ago
2
Problem with the track file
#50
m-bogaerts
closed
1 year ago
3
index out of range while reading syri output
#49
mnshgl0110
closed
1 year ago
1
Custom alignment colors do not show
#48
lgozasht
closed
1 year ago
2
Is it possible to visualize all SyRI SVTYPEs?
#47
KewinOgink
closed
1 year ago
1
syntenic links have no color
#46
Zefeng-Wu
closed
1 year ago
2
plotrs -R doesn't work
#45
YingLiPUMC
closed
1 year ago
2
feature suggestion: using different shades of color to show sequence identity differences across different homologous blocks
#44
yjx1217
closed
1 year ago
3
the 'genome_id' in markers.bed
#43
iehfdshgkjzh
closed
7 months ago
3
Plot feature tracks for the query genomes as well?
#42
yjx1217
closed
1 year ago
2
Customizing the color code used for representing different input genomes
#41
yjx1217
closed
1 year ago
2
error while trying to add track
#40
ylevmirom
closed
1 year ago
11
Error importing pysam.
#39
bijendrabio
closed
1 year ago
3
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