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schneebergerlab
/
syri
Synteny and Rearrangement Identifier
https://schneebergerlab.github.io/syri/
MIT License
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I tried to compare the SV of two genomes with different number of chromosomes, but I got an error
#113
leyanKk
closed
2 years ago
4
A question about "HDR"
#112
anxuan-web
closed
2 years ago
3
SyRI identifying wrong chromosomes to reverse complement
#111
kaede0e
opened
2 years ago
11
package list for syri-1.5 (python3.8) installation
#110
comery
closed
2 years ago
2
IndexError: list index out of range
#109
HongboTang
closed
2 years ago
1
Coordinates of TDM
#108
mnshgl0110
closed
2 years ago
4
Can HDR be regarded as PAV？
#107
Weihankk
closed
2 years ago
3
Which duplication variant result should I use in the syri.summary file?
#106
pjx1990
closed
2 years ago
1
plotsr:195: UserWarning: FixedFormatter should only be used together with FixedLocator ax.set_xticklabels(xticks)
#105
jenny315
closed
2 years ago
1
syri v1.5 error in show_SNP
#104
pan-genome
closed
2 years ago
2
Getting sequence divergence for aligned blocks
#103
owensgl
closed
2 years ago
3
DUP -duplication and INVDUP inverted duplication
#102
clairemerot
closed
2 years ago
6
Error the argument "--prefix" fails - error: "synOut.txt is not present in the directory"
#101
clairemerot
closed
2 years ago
4
inversion detect problem
#100
shiyi-pan
opened
3 years ago
18
Can I remove the parameter '-maxmatch'
#99
shehongbing
closed
3 years ago
1
multiprocessing; Permission denied
#98
shehongbing
closed
3 years ago
0
Chromosome name issue
#97
charlesfeigin
closed
2 years ago
1
inquiries installation warning
#96
distilledchild
closed
3 years ago
1
Error Running SYRI - IndexError: list index out of range
#95
aamirwkhan06
closed
3 years ago
4
why the starting position is greater than the ending position
#94
ChenDepp
closed
3 years ago
1
What is the annotation bed file in plotsr -B option?
#93
JiaoLaboratory
closed
3 years ago
2
Issue with python version (`SyRI uses Python3.5`)
#92
MatteoSchiavinato
closed
3 years ago
2
minimap2-2.20: inversions disappear!
#91
ricardo-aaron
opened
3 years ago
7
what are the meanings of syntheitc blocks named CPG, CPL, and TDM?
#90
comery
closed
3 years ago
2
How to deal with the question when I ran the SyRi
#89
pengyan19
closed
3 years ago
5
what's the difference between copyloss/copgain of DUP and CPL/CPG?
#88
xie-wei-hh
closed
3 years ago
2
What's the quantifying criterion to identifying a HDR?
#87
xie-wei-hh
closed
3 years ago
8
issue regarding syri.pyxFiles
#86
lokesh565
closed
2 years ago
11
Interpreting the output
#84
skyungyong
closed
3 years ago
2
error while runing syri
#83
xie-wei-hh
closed
3 years ago
0
Incorrect CIGAR string found
#82
owensgl
closed
3 years ago
2
Python Library Versions to install?
#81
ccmenard
closed
3 years ago
1
Python Library Versions to install?
#80
ccmenard
closed
3 years ago
0
SyRI crashing for incomplete assemblies
#79
mnshgl0110
closed
3 years ago
4
Why the length of structure variantion(Translocations and Duplications) is longer than chromosome length？
#78
GGhiccup
closed
3 years ago
0
Error in finding SNPs using show-snps: ERROR: Could not open file file1
#77
sandipmkale
closed
3 years ago
3
The "TRANS" in syri.out have overlap
#76
jigaoxiang
closed
3 years ago
6
Is genome A = refgenome and genome B = qrygenome?
#75
ricardo-aaron
closed
3 years ago
2
Question of 'plotsr -R'
#74
CAShuangchao
closed
3 years ago
2
Does syri also annotate DUP/INVDP or TRANS/INVTR within large INV?
#73
cai1991
closed
3 years ago
2
No INVDP items in vcf file
#72
cai1991
closed
3 years ago
1
Query naming in out files
#71
ChriKub
closed
3 years ago
1
Duplications
#70
fergsc
closed
3 years ago
1
Syri for bacterial genome
#69
rthapa1
closed
3 years ago
3
Python ImportError
#68
zbyxinalice03
closed
3 years ago
1
output
#67
jinshangkun
closed
3 years ago
2
Syri for nanopore sequence
#66
rthapa1
closed
3 years ago
1
difference between INV and INVAL
#65
shiyi-pan
closed
3 years ago
1
how to solve this error message
#64
wuxingbo1986
closed
3 years ago
5
Do not have any output when using --novcf parameters!
#63
zhiyongli1995
closed
3 years ago
2
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