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schneebergerlab
/
syri
Synteny and Rearrangement Identifier
https://schneebergerlab.github.io/syri/
MIT License
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different names of sequences
#158
selmanurk
closed
1 year ago
1
re-arragement between two Eukaryotic genomes
#157
Karimi-81
closed
1 year ago
1
can not output Syri.out
#156
aaannaw
closed
1 year ago
4
Inversion missed
#155
biozzq
closed
1 year ago
1
IndexError: list index out of range
#154
rac266
closed
1 year ago
3
What should be done if the genome has a different number of chromosomes?
#153
kuangzhuoran
closed
1 year ago
1
Inversion breakpoint definition
#152
Chenglin20170390
closed
2 years ago
2
Duplications in previous version
#151
annerilotter
closed
1 year ago
1
VCF4.2
#150
zhoudreames
closed
1 year ago
2
lack of the sequence information of variants
#149
zhoudreames
closed
2 years ago
2
missing sequence counts in summary file
#148
mnshgl0110
closed
1 year ago
8
Is translocation one kind of duplication variation?
#147
sen1019san
closed
2 years ago
2
INV and INVDUP check questions
#146
Chenglin20170390
closed
2 years ago
1
Inconsistent chromosome strand
#145
zhouyflab
closed
2 years ago
1
Support of wfmash PAF as input
#144
baozg
opened
2 years ago
18
Does syri report an INV inside an INV ?
#143
Chenglin20170390
closed
2 years ago
1
Unequal number of chromosomes in the genomes
#142
diego-rt
closed
2 years ago
2
fixed typos in example/pipeline.sh
#141
lrauschning
closed
2 years ago
0
Incorrect CIGAR string found
#140
m-bogaerts
closed
2 years ago
1
IndexError: string index out of range
#139
jaudall
closed
2 years ago
5
Syri failed to run. Procedure
#138
hgz2021
closed
2 years ago
5
How is the super large INV defined/formed ?
#137
jxlabWzZ
closed
2 years ago
4
Analysing fusion/fission chromosomes
#136
mnshgl0110
closed
2 years ago
5
Expand SyRI to phased assembly
#135
baozg
closed
2 years ago
5
conda install
#134
jaudall
closed
2 years ago
9
Runtime Error: "TypeError: Cannot interpret '<attribute 'dtype' of 'numpy.generic' objects>' as a data type"
#133
HaimAshk
closed
2 years ago
6
Large InDel
#132
jinshangkun
closed
2 years ago
3
VCF file duplicates question
#131
ahishsujay
closed
1 year ago
6
ImportError pytz/dateutil
#130
njm-data
closed
2 years ago
2
GT field
#129
kdelmore
opened
2 years ago
1
Confusion with Position of large insertion and deletion in vcf output from syri
#128
Dkyuan
closed
2 years ago
4
Merge SyRI VCF results
#127
ahishsujay
closed
2 years ago
2
SAM reader - ERROR
#126
Xinxin0314
closed
2 years ago
3
plostr error
#125
zhangxn-flower
closed
2 years ago
2
'Pandas' object has no attribute 'to_string'
#124
chklopp
closed
2 years ago
2
large, repetitive genome
#123
pjm43
closed
2 years ago
6
If the vcf file that syri output can support to construct VG graph genome?
#122
BRLIA
closed
2 years ago
2
Remove all unplaced scaffolds and contigs from the assemblies.
#121
NicMAlexandre
closed
2 years ago
2
CIGAR string incorrect
#120
NicMAlexandre
closed
2 years ago
2
SyRI module error
#119
ssamberkar
closed
2 years ago
2
Why is syri stuck in last step and using more than 70% memory of server?
#118
farhan-lab
closed
2 years ago
3
using other genome aligners
#117
dcopetti
closed
2 years ago
4
--nosr doesn't work
#116
Yutang-ETH
closed
2 years ago
2
How to sort chrmosomes in plot
#115
Johnsonzcode
closed
2 years ago
5
chroder : No matching contigs for reference chromosome
#114
mnshgl0110
closed
2 years ago
12
I tried to compare the SV of two genomes with different number of chromosomes, but I got an error
#113
leyanKk
closed
2 years ago
4
A question about "HDR"
#112
anxuan-web
closed
2 years ago
3
SyRI identifying wrong chromosomes to reverse complement
#111
kaede0e
opened
2 years ago
11
package list for syri-1.5 (python3.8) installation
#110
comery
closed
2 years ago
2
IndexError: list index out of range
#109
HongboTang
closed
2 years ago
1
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