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schneebergerlab
/
syri
Synteny and Rearrangement Identifier
https://schneebergerlab.github.io/syri/
MIT License
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i have installed syri using conda but after running iam getting error in reading sam file i have used minimap2 to convert fna file to sam file
#207
Hemaprasanth24
closed
10 months ago
4
i was trying to install syri but it ended up with too many warnings and error
#206
Hemaprasanth24
closed
11 months ago
2
i was trying to install syri
#205
Hemaprasanth24
closed
11 months ago
0
SNP Finding error
#204
ABDULLAHGUJJAR
closed
7 months ago
1
colour to non-aligned region
#203
ABDULLAHGUJJAR
closed
11 months ago
1
How can I get location information for unalignable regions?
#202
Wenwen012345
closed
11 months ago
2
Syri not detecting inversions from dgenies
#201
Harper75
closed
11 months ago
4
syri issues
#200
MaOrsucci
closed
7 months ago
6
syri process stopped
#199
mrwangyz
closed
1 year ago
4
Question of Plotsr
#198
Cuteoi
closed
1 year ago
1
IndexError: list index out of range
#197
Bearmax90
closed
7 months ago
9
ERROR - Incorrect CIGAR string found
#196
Jokendo-collab
closed
1 year ago
4
Issue installing syri with bioconda
#195
gabster34
closed
1 year ago
2
getTSV - ERROR - Error in finding parent for SNP getTSV - ERROR - # 566892 2624868 1 2058353 chr01 chr1 Series([], )
#194
karrysorry
closed
1 year ago
5
Another python version issue--syri thinks I'm using an older version than is actually running
#193
DaRinker
closed
1 year ago
2
How can I control where the output files go?
#192
jolespin
closed
1 year ago
1
Unexpected character `-' in string Chr10
#191
ZhaoHang-bio
closed
1 year ago
10
Why snp file produced by syri is empty and followed by error
#190
InfiniteLaugh
closed
1 year ago
1
Inverted chromosome warning
#189
mnshgl0110
closed
1 year ago
5
Support of bgzip fasta
#188
baozg
closed
1 year ago
1
ERROR - syri:116 - Unequal number of chromosomes in the genomes.
#187
Fei5536
closed
1 year ago
6
REF and ALT start positions do not match
#186
zzbbf123
closed
1 year ago
1
missing parameter
#185
mnshgl0110
closed
1 year ago
1
IndexError: list index out of range
#184
DiegoSafian
closed
1 year ago
5
AttributeError with syri
#183
emmannaemeka
closed
7 months ago
1
empty output of chroder
#182
kendaida
opened
1 year ago
6
unequal chromosomes
#181
bijendrabio
closed
1 year ago
3
Incorrect CIGAR string found.
#180
ylevmirom
closed
1 year ago
6
Error when using .SAM file
#179
JesseBNL
closed
1 year ago
18
generating table output error
#178
RCLynch414
closed
1 year ago
2
Fix copy/paste error in VCF exporting
#177
lrauschning
closed
1 year ago
0
IndexError: list index out of range (but no error when swapping the reference and query)
#176
cistarsa
closed
1 year ago
7
Chromosomes IDs do not match
#175
sarah872
closed
1 year ago
2
Genome specific sequences
#174
ASBioinfo
closed
1 year ago
3
Synteny differs between same set of assemblies
#173
genmor
closed
1 year ago
5
Erro in reading BAM file. reference_id -1 out of range
#172
anandravi95
closed
1 year ago
1
Cython package not detected
#171
sghuete
closed
1 year ago
3
SAM reader - ERROR - Incorrect CIGAR string found. CIGAR string can only have I/D/H/S/X/=. CIGAR STRING: CM028859.1
#170
vinitamehlawat
closed
1 year ago
2
Issue of choice of aligner for whole genome alignment of two set of genomes
#169
aamirwkhan06
closed
1 year ago
2
The question with "Unequal number of chromosomes in the genomes" error
#168
fengzt0629
closed
1 year ago
1
the parameter --reg can not show Translocation
#167
aaannaw
closed
1 year ago
1
Import Error
#166
jaudall
closed
1 year ago
1
KeyError thrown when running example with v1.6.3
#165
xtan1221
closed
1 year ago
6
Installation error with conda create
#164
c2997108
closed
1 year ago
8
high fraction of inverted alignments
#163
YuChrming
closed
1 year ago
2
Inversion disappears after running chroder
#162
aaannaw
closed
1 year ago
3
Issue with alignment
#161
diyasen2021
closed
1 year ago
3
ERROR - Numerical chromosome id
#160
biozzq
closed
1 year ago
2
Merge vcf from different sample
#159
RlChen0
closed
1 year ago
1
different names of sequences
#158
selmanurk
closed
1 year ago
1
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