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scidash
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neuronunit
A package for data-driven validation of neuron and ion channel models using SciUnit
http://neuronunit.scidash.org
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Test suite attribute for test weighting
#115
rgerkin
closed
6 years ago
1
How to pass arguments into unittest _test methods.
#114
russelljjarvis
closed
6 years ago
2
Caching of results to avoid redundant simulations across processors
#113
rgerkin
closed
6 years ago
4
Tests call model methods which are only implemented in backend
#112
russelljjarvis
closed
6 years ago
2
Figure out how to handle local XML imports in XML files
#111
rgerkin
closed
6 years ago
2
aibs.py ran out of input.
#110
russelljjarvis
closed
6 years ago
4
Separate all the tests out into their own files
#109
rgerkin
closed
6 years ago
1
Fix the file copying (shutil) so that it only runs with the jNeuroML backend
#108
rgerkin
closed
6 years ago
2
unimplemented get_spike_count etc.
#107
russelljjarvis
closed
7 years ago
1
get_spike_count, get_spike_train unimplemented.
#106
russelljjarvis
closed
6 years ago
2
Separate URL status checks from unit tests
#105
rgerkin
closed
6 years ago
4
Figure out a build that works well with readthedocs
#104
rgerkin
opened
7 years ago
2
Can quantitities dependency be moved back to upstream repo?
#103
rgerkin
closed
6 years ago
2
unit_test/core_tests.py failing due to bbp url
#102
JustasB
closed
7 years ago
5
error: The 'pyneuroml==9999' distribution was not found and is required by neuronunit
#101
JustasB
closed
7 years ago
4
Merge Russell's code
#100
rgerkin
closed
6 years ago
0
Optional weight matrices for optimization
#99
rgerkin
opened
7 years ago
1
Contact NeuroManager people
#98
rgerkin
closed
5 years ago
0
Update documentation notebooks with the new logo
#97
rgerkin
closed
6 years ago
1
When the `score.sort_key` scheme breaks down.
#96
russelljjarvis
closed
7 years ago
3
Optimizer should really compare best candidate model predictions to observations.
#95
russelljjarvis
closed
6 years ago
2
trying to pickle tests or judge does not work
#94
russelljjarvis
closed
6 years ago
13
Merge requirements.txt and setup.py
#93
rgerkin
closed
7 years ago
1
Implement QSNMC
#92
rgerkin
opened
7 years ago
0
NEURON-7.5 documentation is out.
#91
russelljjarvis
closed
7 years ago
0
Can we get rid of VirtualModel?
#90
rgerkin
closed
6 years ago
4
Make unit tests for all the VmTest subclasses
#89
rgerkin
closed
5 years ago
11
Create model class that loads results from pre-computed traces
#88
rgerkin
closed
7 years ago
1
Double checking sciunit score sort_key values, greater distance from zero greater goodness.
#87
russelljjarvis
closed
7 years ago
1
AttributeError: 'Quantity' object has no attribute 'sampling_period'
#86
russelljjarvis
closed
7 years ago
4
Add exec_in_dir fix to run_lems_with_jneuroml_neuron and any other run_lems_with_jneuroml_* wrappers in pyNeuroML
#85
rgerkin
closed
7 years ago
1
spikes2widths IndexError: too many indices for array
#84
russelljjarvis
closed
7 years ago
1
spike_functions neo type casting problem AS versus ASA
#83
russelljjarvis
closed
7 years ago
3
possible typo in neuronunit/__init__.py
#82
russelljjarvis
closed
7 years ago
1
Set backend logic to use __new__ to dynamically modify class
#81
rgerkin
closed
7 years ago
1
Should we switch from Scoop to IPyParallel?
#80
rgerkin
closed
7 years ago
9
How do we want to handle continuous integration checks (Docker, Travis, etc.)
#79
rgerkin
closed
5 years ago
2
Add IgorIO support
#78
rgerkin
closed
7 years ago
1
Why aren't models/backends.py and neuron/models.py merged?
#77
JustasB
closed
6 years ago
12
Particle filtering for tests that can be approximately evaluated with partial traces
#76
rgerkin
opened
7 years ago
0
Create new protocols subdirectory
#75
rgerkin
opened
7 years ago
7
RuntimeWarning: overflow encountered in exp
#74
russelljjarvis
closed
7 years ago
3
Pipeline for handling larger NML projects with simulation experiments
#73
rgerkin
opened
7 years ago
0
Add model classes for AIBS GLIF models
#72
rgerkin
closed
5 years ago
1
Create tests corresponding to AIBS and BBP stimulation protocols
#71
rgerkin
opened
7 years ago
9
Unit tests with arguments
#70
rgerkin
closed
6 years ago
3
new changes to backends, NEURON introduces a lot of problems.
#69
russelljjarvis
closed
7 years ago
6
Move to neo 0.5
#68
appukuttan-shailesh
closed
7 years ago
2
documenting problem: Slower performance for optimization code on docker in osx/mac versus Ubuntu
#67
russelljjarvis
closed
7 years ago
0
neuronunit/__init__.py
#66
russelljjarvis
closed
6 years ago
5
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