INFO Entered into dir: cd '/beegfs2/gsharov/ScipionUserData/projects/relion30_tutorial_scipion'
== BEGIN Resolution Map Calculation ==
= Reading Input Parameters
:: Time elapsed: 0 minutes and 0.19 seconds
= Testing Whether the Input Volume has been Low-pass Filtered
=======================================================================
| |
| The input volume is quite large ( >160 voxels). |
| |
| ResMap will run its low-pass filtering test on a |
| cube of size 160 taken from the center of the volume. |
| |
| This is usually not a problem, but please notify the |
| authors if something goes awry. |
| |
=======================================================================
=======================================================================
| |
| The volume does not appear to be low-pass filtered. |
| |
| Great! |
| |
=======================================================================
:: Time elapsed: 0 minutes and 1.82 seconds
= ResMap will now run with the following parameters
inputMap: volume1.map
vxSize: 0.89
pValue: 0.05
minRes: 10.00
maxRes: 3.50
stepRes: 1.00
LPFfactor: 0.00
= Computing Mask Separating Particle from Background
:: Time elapsed: 0 minutes and 3.57 seconds
=======================================================================
| |
| ResMap Pre-Whitening (beta) Tool |
| |
| The volume is quite large. |
| |
| ResMap will run its pre-whitening on the largest |
| cube it can fit within the particle and in the background. |
| |
| In split volume mode, ResMap will only fit a cube |
| inside the particle and use the difference map as the background. |
| |
=======================================================================
= Computing The Largest Cube Within the Particle
:: Time elapsed: 0 minutes and 0.33 seconds
= Computing The Largest Cube in the Background
:: Time elapsed: 0 minutes and 0.46 seconds
= Extracting Cubes and Calculating Spherically Averaged Power Spectra
Exception in Tkinter callback
Traceback (most recent call last):
File "/lmb/home/gsharov/soft/scipion2/software/lib/python2.7/lib-tk/Tkinter.py", line 1541, in __call__
return self.func(*args)
File "/lmb/home/gsharov/soft/scipion2/software/lib/python2.7/lib-tk/Tkinter.py", line 592, in callit
func(*args)
File "/lmb/home/gsharov/soft/scipion2/pyworkflow/gui/dialog.py", line 631, in proccess
func()
File "/lmb/home/gsharov/soft/scipion-em-plugins/scipion-em-resmap/resmap/wizards.py", line 184, in _runBeforePreWhitening
self.results = prot.runResmap(self.workingDir, wizardMode=True)
File "/lmb/home/gsharov/soft/scipion-em-plugins/scipion-em-resmap/resmap/protocols/protocol_resmap.py", line 296, in runResmap
results = ResMap_algorithm(**args)
File "/lmb/home/gsharov/soft/scipion2/software/em/resmap-1.1.5-s2/ResMap_algorithm.py", line 229, in ResMap_algorithm
scipionPrewhitenParams = scipionPrewhitenParams
File "/lmb/home/gsharov/soft/scipion2/software/em/resmap-1.1.5-s2/ResMap_algorithm.py", line 860, in preWhiteningLoop
insideBox[2]-halfWidthBox:insideBox[2]+halfWidthBox ];
TypeError: slice indices must be integers or None or have an __index__ method
azazellochg
commented
5 years ago
Am I using wrong parameter values?