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scipion-em / scipion-em-resmap

Plugin to use Resmap programs within the Scipion framework
GNU General Public License v3.0
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============= Resmap plugin

This plugin provides a wrapper for ResMap program <https://sourceforge.net/projects/resmap-latest>_.

.. figure:: http://scipion-test.cnb.csic.es:9980/badges/resmap_devel.svg :align: left :alt: build status

Installation

You will need to use 3.0 <https://github.com/I2PC/scipion/releases/tag/V2.0.0>_ version of Scipion to be able to run these protocols. To install the plugin, you have two options:

a) Stable version

.. code-block::

scipion installp -p scipion-em-resmap

b) Developer's version

* download repository

.. code-block::

    git clone https://github.com/scipion-em/scipion-em-resmap.git

* install

.. code-block::

    scipion installp -p path_to_scipion-em-resmap --devel

ResMap binaries will be installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/resmap-1.95, if you want to change it, set RESMAP_HOME in scipion.conf file pointing to the folder where the ResMap is installed. ResMap binary (default ResMap-1.95-cuda-Centos7x64) and CUDA lib module (default ResMap_krnl-cuda-V8.0.61-sm60_gpu.so) can be set by RESMAP and RESMAP_GPU_LIB vars, respectively. You also might need to set RESMAP_CUDA_LIB in the config file pointing to the correct location of system CUDA libraries.

To check the installation, simply run the following Scipion test: scipion test resmap.tests.test_protocols_resmap.TestResMap

A complete list of tests can also be seen by executing scipion test --show --grep resmap

Supported versions

1.95

Protocols

References

  1. Kucukelbir A. et al. (2014) Quantifying the local resolution of cryo-EM density maps. Nature Methods 11, 63-65.