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sct-pipeline
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ukbiobank-spinalcord-csa
Measure of the averaged cross-sectional area (cord CSA) between C2 and C3 of the spinal cord with UK Biobank Brain MRI dataset.
MIT License
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Test procedure for candidates helping with manual correction of segmentations
#36
jcohenadad
opened
3 years ago
0
Add video link to segmentation tutorial in README
#35
sandrinebedard
closed
3 years ago
1
Replace FSLeyes for ITK-SNAP for manual segmentations
#34
sandrinebedard
closed
3 years ago
0
Replace FSLeyes with itk-snap for manual segmentation
#33
sandrinebedard
closed
3 years ago
2
Memory allocation problem when running 127 jobs on joplin
#32
sandrinebedard
opened
3 years ago
3
Installation of dependency 'gradunwarp' is error-prone
#31
joshuacwnewton
closed
3 years ago
10
Split processing into 2 scripts
#30
sandrinebedard
closed
3 years ago
0
UK - Biobank New BIDS dataset
#29
mpompolas
opened
3 years ago
7
Add script and config files for multiprocessing in sub-datasets
#28
sandrinebedard
closed
3 years ago
1
Use participant.tsv file instead of subjects_gbm3100.csv
#27
sandrinebedard
closed
3 years ago
3
Implement T1w registration to T2w for vertebral labeling
#26
sandrinebedard
closed
3 years ago
0
Clarified comment on process_data.sh
#25
jcohenadad
closed
3 years ago
0
Change name of repository
#24
sandrinebedard
closed
3 years ago
10
Change file _seg_labeled_discs.nii.gz in FILES_TO_CHECK list
#23
sandrinebedard
closed
3 years ago
0
See if script select_subject.py still usefull
#22
sandrinebedard
opened
3 years ago
0
Use participant.tsv instead of subjects_gbm3100.csv
#21
sandrinebedard
closed
3 years ago
0
No use of manual disc label for T2w in process_data.sh
#20
sandrinebedard
closed
3 years ago
8
Sort csa values by subject id before adding parameters
#19
sandrinebedard
closed
3 years ago
4
Images cropped in Qc report of manual correction for labeled disc
#18
sandrinebedard
closed
3 years ago
6
Output csa results from process_data don't appear by subject id order in csa_T1w.csv and csa_T2w.csv
#17
sandrinebedard
closed
3 years ago
1
Add tool uk_manual_correction
#16
sandrinebedard
closed
3 years ago
0
Statistics
#15
sandrinebedard
closed
3 years ago
1
Add documentation for creating and organizing manual labels
#14
jcohenadad
closed
3 years ago
0
Unaligned labeling of discs for T2w images after sct_label_vertebrae in process_data.sh
#13
sandrinebedard
closed
3 years ago
2
Subtract unaligned images to compare gradcorr with ukbiobank gradcorr
#12
sandrinebedard
closed
3 years ago
5
Subtract two images to highlight their differences for comparing grad.corr results
#11
jcohenadad
closed
3 years ago
2
Document parameters.txt
#10
jcohenadad
closed
3 years ago
1
Add native resolution, correction of parameters in process_data.sh
#9
sandrinebedard
closed
3 years ago
1
Add gradient distorsion correction
#8
sandrinebedard
closed
3 years ago
0
coeff.grad discussion
#7
alexfoias
closed
3 years ago
1
Select the right coeff.grad file for each patient in process_data.sh
#6
sandrinebedard
closed
3 years ago
12
Add tool uk_get_subjects_info
#5
sandrinebedard
closed
3 years ago
1
Various comments on the process_data.sh script and README
#4
jcohenadad
closed
3 years ago
3
Add gradient distortion correction to process_data.sh
#3
sandrinebedard
closed
3 years ago
3
Select subjects
#2
sandrinebedard
closed
3 years ago
0
'str" object has no attribute 'decode' using sct_deepseg_sc
#1
sandrinebedard
closed
3 years ago
3
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