Closed ronghai-li closed 1 year ago
Hi,
Cheers
Yes, scCODA is suitable for all kinds of high-throuput sequencing data. I don't see a reason why you shouldn't use it for scATAC data, as long as you have some clustering labels. scATAC also has limited library size, so the data characteristics we addressed with scCODA should remain.
Description of feature
hey,thanks your all do for this beautiful package!
i am a beginner,i have some scATAC-dataset from difference groups, i want to try to do celltype Compositional analysis use scCODA;
1.I want to know if pertpy_scCODA can use for scATAC-dataset;
2.and how Translating from ArchR proj to Anndata,it is better if you can give a sample;
thanks all