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scverse / pertpy

Perturbation Analysis in the scverse ecosystem.
https://pertpy.readthedocs.io/en/latest/
MIT License
91 stars 19 forks source link

Add enrichment #482

Closed Zethson closed 6 months ago

Zethson commented 6 months ago

Fixes #467

codecov[bot] commented 6 months ago

Codecov Report

Attention: 75 lines in your changes are missing coverage. Please review.

Comparison is base (2c6e816) 63.97% compared to head (d2ec82b) 63.66%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #482 +/- ## ========================================== - Coverage 63.97% 63.66% -0.32% ========================================== Files 42 43 +1 Lines 4769 4923 +154 ========================================== + Hits 3051 3134 +83 - Misses 1718 1789 +71 ``` | [Files](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab) | Coverage Δ | | |---|---|---| | [pertpy/data/\_dataloader.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L2RhdGEvX2RhdGFsb2FkZXIucHk=) | `100.00% <ø> (ø)` | | | [pertpy/metadata/\_cell\_line.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L21ldGFkYXRhL19jZWxsX2xpbmUucHk=) | `62.87% <ø> (ø)` | | | [pertpy/metadata/\_drug.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L21ldGFkYXRhL19kcnVnLnB5) | `91.17% <100.00%> (+1.52%)` | :arrow_up: | | [pertpy/plot/\_coda.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Bsb3QvX2NvZGEucHk=) | `100.00% <ø> (ø)` | | | [pertpy/tools/\_\_init\_\_.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19faW5pdF9fLnB5) | `100.00% <100.00%> (ø)` | | | [pertpy/tools/\_augur.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19hdWd1ci5weQ==) | `66.76% <100.00%> (ø)` | | | [pertpy/tools/\_coda/\_base\_coda.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19jb2RhL19iYXNlX2NvZGEucHk=) | `56.08% <ø> (ø)` | | | [pertpy/tools/\_milo.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19taWxvLnB5) | `49.00% <ø> (ø)` | | | [pertpy/tools/\_mixscape.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19taXhzY2FwZS5weQ==) | `79.22% <ø> (ø)` | | | [pertpy/tools/\_dialogue.py](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab#diff-cGVydHB5L3Rvb2xzL19kaWFsb2d1ZS5weQ==) | `13.44% <0.00%> (ø)` | | | ... and [2 more](https://app.codecov.io/gh/theislab/pertpy/pull/482?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=theislab) | |