Generalize de_res_to_anndata - Githubissues

scverse / pertpy

Perturbation Analysis in the scverse ecosystem.

https://pertpy.readthedocs.io/en/latest/

MIT License

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Generalize de_res_to_anndata #491

Closed Zethson closed 3 months ago

Zethson commented 8 months ago

Description of feature

de_res_to_anndata is not flexible enough:

[ ] Check whether it also works with less columns (no gene names, score, [....]). It must be more flexible to allow for the input of the DE results as generated by pertpy

[ ] The following must be parameterized

"params": {
            "groupby": groupby,
            "reference": "rest",
            "method": "other",
            "use_raw": True,
            "layer": None,
            "corr_method": "other",
        },

[ ] Add tests accordingly