Pseudobulk space improvements

scverse / pertpy

Perturbation Analysis in the scverse ecosystem.

https://pertpy.readthedocs.io/en/latest/

MIT License

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Closed Zethson closed 4 months ago

Zethson commented 5 months ago

[x] Passing groups_col automatically as discussed or documenting/properly parameterizing it
[x] Consider automatically casting target_col to categorical for faster calculations -> we are already doing this https://github.com/theislab/pertpy/blob/main/pertpy/tools/_perturbation_space/_simple.py#L164C59-L164C79 but maybe we can do it b4