search

searlelab / chronologer

Retention time prediction
Apache License 2.0
2 stars 3 forks source link

Encyclopydia missing #2

Open yangkl96 opened 12 months ago

yangkl96 commented 12 months ago

This is a small issue, but it is not clear how encyclopydia can be installed. I simply commented out the lines where it was required and it worked fine.

(chronologer_env) C:\Users\yangkl\Downloads\proteomics\predictionTools>python Train_Chronologer.py --lr_weight 0.5 --gpu --output_dir chronologer\models
Traceback (most recent call last):
  File "C:\Users\yangkl\Downloads\proteomics\predictionTools\Train_Chronologer.py", line 9, in <module>
    from chronologer.src.chronologer.training_functions import train_chronologer
  File "C:\Users\yangkl\Downloads\proteomics\predictionTools\chronologer\src\chronologer\training_functions.py", line 17, in <module>
    from chronologer.src.training_loop import train_model
  File "C:\Users\yangkl\Downloads\proteomics\predictionTools\chronologer\src\training_loop.py", line 10, in <module>
    from encyclopydia.src.utils import timer
ModuleNotFoundError: No module named 'encyclopydia'
elaboy commented 10 months ago

I got it running by swapping encyclopydia with chronologer