seattleflu augur-build issues

seattleflu / augur-build

the (in development) augur build for understanding influenza dynamics in Seattle

https://seattleflu.org

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issues

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download_sfs_metadata: update to v3

#34 joverlee521 closed 3 years ago
1
Fix hidden node annotation script for v2 JSONs

#33 jameshadfield closed 4 years ago
1
Clean up incoming ID3C data

#32 trvrb opened 4 years ago
11
Download SFS metadata and sequences from ID3C

#31 joverlee521 closed 5 years ago
2
Coloring scipts

#30 miparedes closed 5 years ago
1
Pairwise comparisons based on categorical label

#29 miparedes closed 5 years ago
0
Produces figures of introductions into Seattle.

#28 cassiawag closed 5 years ago
1
Reproducible Coloring based on Location Label

#27 miparedes closed 5 years ago
1
Adds plot_gen_geo_distance.py

#26 cassiawag closed 5 years ago
1
Finding Genetic Distance to Closest Sample

#25 miparedes closed 5 years ago
5
Adds script to plot genetic vs. geo distance

#24 cassiawag closed 5 years ago
5
Updates feature>source for reference genbank files

#23 cassiawag closed 5 years ago
1
Optional Filtering-to-region

#22 miparedes closed 5 years ago
2
Calculate genetic distance to closest sample

#21 trvrb closed 5 years ago
1
Compare genetic distance to geographic distance

#20 trvrb closed 5 years ago
0
Include script to hide ancestral nodes based on cluster designation

#19 trvrb closed 5 years ago
4
Make filter-to-region optional in extract_cluster_fastas.py

#18 trvrb closed 5 years ago
1
Create reproducible coloring for census tracts

#17 trvrb opened 5 years ago
0
Nucleotide length in reference .gb file

#16 trvrb closed 5 years ago
3
Adds rules for aggregated trees to Snakefile.

#15 cassiawag closed 5 years ago
1
Updates header for reference genbank file.

#14 cassiawag closed 5 years ago
2
Updated H3N2 reference to A/Perth/16/2009.

#13 cassiawag closed 5 years ago
4
Filtering-to-seattle

#12 miparedes closed 5 years ago
2
Updated name, description, id in reference genome.

#11 cassiawag closed 5 years ago
0
Swap out reference for a more recent virus

#10 trvrb opened 5 years ago
3
Missing header information in genome reference

#9 trvrb closed 5 years ago
1
Renames clusters starting with 0.

#8 cassiawag closed 5 years ago
1
Creates reference full-genome genbank file.

#7 cassiawag closed 5 years ago
1
Creates a reference full-genome genbank file.

#6 cassiawag closed 5 years ago
0
Genome reference

#5 trvrb closed 5 years ago
0
Min size

#4 cassiawag closed 5 years ago
2
Filter cluster output

#3 trvrb closed 5 years ago
5
Genome_clusters

#2 cassiawag closed 5 years ago
0
genomes-clusters

#1 cassiawag closed 5 years ago
1