spatula : A C++ toolkit for spatial transcriptomics

Overview

spatula is a collection of C++ tools that are designed to help analyze sub-micron resolution spatial transcriptomics data such as Seq-Scope. These tools are under active development, so they may change frequently.

Documentation

A detailed documentation, including installation guide and description of individual tools, can be found at https://seqscope.github.io/spatula/

Installation

You can install spatula by following the instructions below:

## clone the repository
git clone --recursive https://github.com/seqscope/spatula.git
cd spatula

## build the submodules
cd submodules
sh -x build.sh
cd ..

## build spatula
mkdir build
cd build
cmake ..
make

## list available package
../bin/spatula --help