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serratus-bio / open-virome

monorepo for data explorer UI and APIs
http://openvirome.com/
GNU Affero General Public License v3.0
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Add MWAS interface as a new page on OpenVirome.com #43

Open lukepereira opened 4 months ago

lukepereira commented 4 months ago

I think this feature would be pretty useful and would likely encourage users to return to the site.

If we're concerned about costs, we can only allow calls for small-medium MWAS jobs and make it unrestricted for us to run internally. It also seems possible that MWAS on the virome could look up values in Declan's pre-computed rfam.

possible plots:

Another thing to explore would be combining the v-enrichment scores with pre-computed values on rfam. i.e. find "important" sOTUs in a virome, map them to a list of rfam/biosamples, then look up pre-computed pvalues in s3

ababaian commented 2 months ago

@lukepereira can you check in with Ethan on what will be needed to get this online? I think he's really close with his lambda implementation.

almosnow commented 2 months ago

[I'll ask Ethan for his GH account to get him here as well]

finesden33 commented 2 months ago

https://github.com/declanlim/mwas

mwas repo (the readme is very outdated)

ababaian commented 2 months ago

@finesden33 Can you update the README and what's the status on the API MWAS being online?