Open Virome

• Open Virome Online
• OpenViromeR: R language interface package for Open Virome data

Starting an Open Virome instance locally

To start the app using local frontend with API calls to the remote server

cd frontend
npm install
npm start

To start the app using local front end and local API:

cd frontend
npm install
npm run start-local

In a second terminal

cd api
npm install
npm start

Running MWAS locally

You will need a local installation of s5cmd to display MWAS data when running the API locally. Can be installed with pip or binaries.

This is because we are temporarilly using precomputed MWAS values from s3. We'll likely update this to either use a database to store precomputed results or compute on demand with a lambda API.