Open ababaian opened 1 month ago
I noticed this as well. I think there is more complexity when the user mixes multiple filters and the runs overlap, but it should be possible to filter out irrelevant sOTUs based on sOTU filters as a post-processing step
Ingrida but maybe the issue is i am getting more than needed; or this is also as expected? See at the top: Virus Family: Polycipiviridae while in the graph: you have many different +ssRNA viruses, not just picorna-like
Please add a Time Estimate:
for this issue.
I have a query here for sOTU
u145189
andu183036
with the purpose of retrieving the following component I have in RThe current Open Virome returns a more complex network![image](https://github.com/user-attachments/assets/d6b3da55-29fc-471d-82c4-a2a835fd7d92)
What appears to be happening is that all
runs
which have those sOTU are being matched (correctly), and then what the Virome Module is displaying is all sOTU in the matching runs, including those not specificed in the query are being displayed.I think both behaviours are/can be technically correct, but the expected behaviour upfront I think should be to return/display only matching sOTU. Otherwise it's unclear why co-associated sOTU are being shown. This certainly will be neccesary when moving towards palm-palm networks to avoid pulling down huge clusters of unrelated sequences when querying by sOTU/Sequence.