issues
search
sgkit-dev
/
sgkit-plink
NOW ARCHIVED! PLINK IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.
Apache License 2.0
0
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Update api rename
#32
ravwojdyla
closed
3 years ago
1
Support fancy and scalar indexing
#31
eric-czech
opened
4 years ago
0
Switch to bed_reader instead of pysnptools
#30
CarlKCarlK
closed
4 years ago
2
Document data generation for unit test
#29
eric-czech
opened
4 years ago
0
Remove slash from reader doc variables
#28
eric-czech
closed
4 years ago
0
Remove slash from variable names in read_plink docstring
#27
eric-czech
closed
4 years ago
0
Test c++ parallelism vs dask parallelism for reads
#26
eric-czech
opened
4 years ago
0
Mypy integration
#25
eric-czech
closed
4 years ago
0
Add mypy to pre-commit and build
#24
eric-czech
closed
4 years ago
0
Integrate Bed reader code from pysnptools
#23
eric-czech
closed
4 years ago
12
Run tests that use pytest.figure
#22
CarlKCarlK
opened
4 years ago
3
Pysnptools Bed API Usage
#21
eric-czech
closed
4 years ago
10
Precompute fixed-length string dtypes
#20
eric-czech
closed
4 years ago
1
Upgrade pysnptools
#19
eric-czech
closed
4 years ago
0
Bump pysnptools and switch to int reads
#18
eric-czech
closed
4 years ago
0
Figure out if Bed needs dummy axis vectors with full path to .bed file
#17
eric-czech
closed
4 years ago
1
Standardize missing value sentinels for string arrays
#16
eric-czech
opened
4 years ago
0
Add arguments to read_plink for separate paths
#15
eric-czech
closed
4 years ago
0
Add arguments to read_plink for separate paths
#14
eric-czech
closed
4 years ago
0
Removing slash from variable names
#13
eric-czech
closed
4 years ago
2
Precompute fixed-length string dtypes
#12
eric-czech
opened
4 years ago
1
Pysnptools upgrade and associated changes
#11
eric-czech
closed
4 years ago
0
Add minimal setuptools_scm config.
#10
jeromekelleher
closed
4 years ago
2
Use encode_array from sgkit
#9
tomwhite
closed
4 years ago
1
Initial cli
#8
jeromekelleher
closed
4 years ago
11
Add conversion CLI
#7
jeromekelleher
opened
4 years ago
3
Suboptimal parallelism
#6
jeromekelleher
opened
4 years ago
3
Adding package metadata and python version constraint
#5
eric-czech
closed
4 years ago
0
Add python version floor
#4
eric-czech
closed
4 years ago
0
NOT REALLY A CHANGE DON'T MERGE
#3
jeromekelleher
closed
4 years ago
2
Install fails on bgen.h
#2
jeromekelleher
closed
4 years ago
4
Pysnptools reader implementation
#1
eric-czech
closed
4 years ago
4