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sgkit-dev
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sgkit-publication
Sgkit publication repository
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Haircut
#98
jeromekelleher
closed
8 months ago
0
Add chunked data model diagram
#95
timothymillar
closed
10 months ago
0
Sequential VCF parsing
#94
jeromekelleher
closed
10 months ago
8
Storage draft
#91
jeromekelleher
closed
10 months ago
1
Pass at abstract and change title
#90
jeromekelleher
closed
10 months ago
0
QC section
#89
hammer
opened
10 months ago
1
Complete first draft of "distributed compute" section
#88
jeromekelleher
opened
10 months ago
0
Initial pass at distributed compute narrative
#87
jeromekelleher
closed
10 months ago
0
Contribution protocols
#85
jeromekelleher
closed
10 months ago
1
Parquet for VCFs context
#84
hammer
closed
10 months ago
0
Add overleaf link and editing protocols to README
#83
jeromekelleher
closed
10 months ago
0
Generalise title
#82
jeromekelleher
closed
10 months ago
2
Refactor
#81
jeromekelleher
closed
10 months ago
0
Gigascience
#80
jeromekelleher
closed
10 months ago
0
Statistical genetics section
#78
hammer
opened
10 months ago
23
Put figures into repo?
#76
hammer
closed
10 months ago
4
Potential discussion narrative
#75
jeromekelleher
closed
10 months ago
3
Add some memory benchmarks
#74
jeromekelleher
opened
11 months ago
0
Record storage destination
#73
jeromekelleher
closed
11 months ago
0
Whole matrix supplemental
#72
jeromekelleher
closed
10 months ago
3
Add supplemental whole-matrix compute figure
#71
jeromekelleher
closed
10 months ago
1
Add TileDB to comparisons?
#70
timothymillar
opened
11 months ago
1
Data for genozip
#69
jeromekelleher
closed
11 months ago
0
Add support for specific slices for genozip
#68
jeromekelleher
closed
11 months ago
0
Add slicing support to savvy-afdist for fig 3
#67
jeromekelleher
opened
11 months ago
0
Add interesting sample-subsetting in Fig 3
#66
jeromekelleher
opened
11 months ago
1
Plot subsetting performance
#65
jeromekelleher
closed
11 months ago
0
Update story
#64
jeromekelleher
closed
11 months ago
0
Update code to run for full dataset
#63
jeromekelleher
closed
11 months ago
0
Threads data
#62
jeromekelleher
closed
11 months ago
0
Add version tracking
#60
jeromekelleher
closed
11 months ago
0
Improve data collection interface
#59
jeromekelleher
closed
11 months ago
0
Greater than k-fold speedup in sgkit with k threads
#58
jeromekelleher
closed
11 months ago
3
Initial fold-speedup from threads plot
#57
jeromekelleher
closed
11 months ago
0
Update numbers
#56
jeromekelleher
closed
11 months ago
1
Fix segfault in savvy-afdist
#55
benjeffery
closed
11 months ago
0
Flesh out the bibliography for compression tools
#54
jeromekelleher
closed
11 months ago
0
Add genozip tool + preliminary file size data.
#53
jeromekelleher
closed
11 months ago
1
Discuss "compressive genomics"
#52
jeromekelleher
opened
11 months ago
2
A draft of the story
#50
jeromekelleher
closed
11 months ago
3
Change target journal to GigaScience?
#49
jeromekelleher
closed
10 months ago
3
Data storage story
#48
jeromekelleher
closed
11 months ago
0
Optimise chunk sizes for both perf and storage scaling plots
#47
benjeffery
opened
11 months ago
2
Make data model fig higher level with chunking
#46
jeromekelleher
closed
10 months ago
4
Savvy benchmark - WIP
#45
benjeffery
closed
11 months ago
3
Use HAPNEST data for gwas demo?
#43
jeromekelleher
opened
1 year ago
8
Benchmark relationship matrices
#42
timothymillar
opened
1 year ago
7
Pass through API list to categorise
#41
jeromekelleher
closed
1 year ago
0
1m vcf results
#40
jeromekelleher
closed
1 year ago
1
Scaling-out comparison with Hail
#39
jeromekelleher
opened
1 year ago
0
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