shahab-sarmashghi Skmer issues

shahab-sarmashghi / Skmer

Fast and accurate tool for estimating genomic distances between genome-skims

https://shahab-sarmashghi.github.io/Skmer/

Other

39 stars 8 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

> Thank you for reporting this. However, we need more information to debug. This error suggests that software simply can not find folder with subreplicate repositores such as rep0, rep1, etc. in a provided path. Please check you directory path and accessibility. In suggested workflow "skmer subsample" command should be run first so it creates subasample folder and this path should be given as an input to correction command. Thank you,

#33 rlzhang1216 closed 2 weeks ago
0
rep0 ValueError: Please check subsample directory and try again

#32 rlzhang1216 closed 2 weeks ago
2
Inquiry Regarding modifications to Skmer for Detailed k-mer Data Output

#31 guocenxtbg opened 5 months ago
0
rep21 ValueError: Please check subsample directory and try again

#30 Zoule7 opened 7 months ago
1
ZeroDivisionError: float division by zero

#29 mengyuanzhou closed 8 months ago
0
ZeroDivisionError: float division by zero

#28 timesgoing closed 11 months ago
1
jellyfish error

#27 cpouchon closed 1 year ago
2
Error: Distance precision must not exceed 21 digits.

#26 sanvva opened 1 year ago
4
Cov correction

#25 IsaacT1123 closed 1 year ago
0
unaccurate genome length estimation

#24 fjruizruano closed 2 years ago
1
jellyfish error

#23 jbeck11 closed 2 years ago
2
ReadMe updates

#22 noraracht closed 2 years ago
0
Subsample support

#21 noraracht closed 2 years ago
0
bootstrap??

#20 dabitz closed 2 years ago
5
Fixing the issue with query -a when moving a dir to another file systems

#19 shahab-sarmashghi closed 4 years ago
0
OSError: [Errno 18] Invalid cross-device link

#18 balabanmetin closed 4 years ago
0
Parallel sketching

#17 nikostr closed 2 years ago
1
Pair-end reads or mash sketches as inputs

#16 jimmyliu1326 closed 2 years ago
3
Skmer pop

#15 sahilsaboo closed 3 years ago
0
Properly handle keyboard interrupts

#14 shahab-sarmashghi closed 5 years ago
0
Computing average read length

#13 shahab-sarmashghi closed 5 years ago
1
Safeguard reading .hist files

#12 shahab-sarmashghi closed 5 years ago
0
Jukes-Cantor transformation for d=0

#11 shahab-sarmashghi closed 5 years ago
0
Fails with .fq input files

#10 c-j-b closed 5 years ago
2
Adding a sub-command to compute distances for a library

#9 shahab-sarmashghi closed 5 years ago
1
Adding test

#8 shahab-sarmashghi opened 6 years ago
2
Error handling

#7 shahab-sarmashghi closed 5 years ago
0
Compute total length with fewer assumptions about file format

#6 shahab-sarmashghi closed 6 years ago
1
Add the option to use fasta files as well

#5 shahab-sarmashghi closed 5 years ago
1
Make Windows compatible

#4 shahab-sarmashghi opened 6 years ago
0
Remove awk and mv from code

#3 shahab-sarmashghi closed 6 years ago
1
Allow .gz files as input

#2 shahab-sarmashghi opened 6 years ago
3
An option for mapping file names to species names

#1 shahab-sarmashghi opened 6 years ago
0