r4biol

R for Biological Data Analysis

• Part 1 (R with a biological twist)

  • Importing data from a spreadsheet
  • selecting columns
  • restricting rows with filter
  • summarising data, and grouping
  • boxplots and bar plots
  • "piping" to create short workflows
  • TO-DO make some exercises

• Part 2 (Tidy RNA-seq)

  • Import some RNA-sequencing counts
  • long vs wide data
  • Using PCA as QC diagnostic
  • Differential expression to find statistically-significant genes
  • Associating statistical findings with biological and clinical significance