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showteeth / DEbPeak

DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
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The Web based tool does not work at all after the data upload page #2

Open sfanijo opened 1 year ago

sfanijo commented 1 year ago

image

sfanijo commented 1 year ago

The web-based one has never worked so far. Only the "Data" upload page works. Can you comment on what's wrong? or it is just no longer being maintained?

showteeth commented 1 year ago

Hi, Can you send me the files you uploaded?

Sincerely, YB

DrSoftouch @.***>于2023年2月1日 周三15:32写道：

The web-based one has never worked so far. Only the "Data" upload page works. Can you comment on what's wrong? or it is just no longer being maintained?

— Reply to this email directly, view it on GitHub https://github.com/showteeth/DEbPeak/issues/2#issuecomment-1411586190, or unsubscribe https://github.com/notifications/unsubscribe-auth/AKMAJ3V4LWMPISBXQ3PPH6DWVIGPLANCNFSM6AAAAAAUNJVZN4 . You are receiving this because you are subscribed to this thread.Message ID: @.***>

sfanijo commented 1 year ago

Thanks a lot for your swift comment, YB. Your comment pointed my attention to compare the package default document and my own files. I have fixed the discrepancy. It works now.

I do have another request however -- I am quite curious about the inspiration for the various custom functions that is used in the package. Can you please share the supporting paper(s) that details the pipeline followed for the analysis and the intuition behind it?

While I know that many of them stem from popularly known functions for sequence data analysis, I am curious to see the structure it follows in terms of arriving at the pipeline and the arguments for how they are properly interpreted.

Also, are you able to include the MOTIF analysis on the Web version?

Look forward to it.

showteeth commented 1 year ago

Hi,

Thanks for your usage! The paper is under review, and I will update and inform you in time after the paper is published!

YB

DrSoftouch @.***> 于2023年2月2日周四 08:57写道：

Thanks a lot for your swift comment, YB. Your comment pointed my attention to compare the package default document and my own files. I have fixed the discrepancy. It works now.

I do have another request however -- I am quite curious about the inspiration for the various custom functions that is used in the package. Can you please share the supporting paper(s) that details the pipeline followed for the analysis and the intuition behind it?

While I know that many of them stem from popularly known functions for sequence data analysis, I am curious to see the structure it follows in terms of arriving at the pipeline and the arguments for how they are properly interpreted.

Look forward to it.

— Reply to this email directly, view it on GitHub https://github.com/showteeth/DEbPeak/issues/2#issuecomment-1412993091, or unsubscribe https://github.com/notifications/unsubscribe-auth/AKMAJ3W43ZLB3QU7ZKIBXPTWVMA7DANCNFSM6AAAAAAUNJVZN4 . You are receiving this because you commented.Message ID: @.***>