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ACT-COVID-Ontology
ACT COVID Ontology
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ACT-COVID-Ontology
The COVID-19 ontology that is deployed on the ACT network.
Publication
Development of a Coronavirus Disease 2019 (COVID-19) Application Ontology for the Accrual to Clinical Trials (ACT) network
https://academic.oup.com/jamiaopen/article/4/2/ooab036/6237901
ACT COVID resources
ACT COVID ontology in i2b2 -
http://dbmi-ncats-test01.dbmi.pitt.edu/webclient/
(login: demo / password: demouser)
Inclusion criteria for ACT COVID cohort -
https://github.com/shyamvis/covid-phenotyping/blob/master/inclusion-criteria.md
Acceptance test queries -
https://docs.google.com/spreadsheets/d/11LGtIdXAFoKMS0ARw4wjSK7VgmTyUiiemr3T8o0YfN4/edit#gid=692068358
Google sheet for test sites -
https://docs.google.com/spreadsheets/d/1gqDP6TBzweU23dwF9EPcmXHsfXtBwaHzprifHjSzEC8/edit#gid=0
COVID-19 related codes (ICD-10-CM, CPT4, HCPCS, LOINC, etc.) -
https://github.com/shyamvis/covid-phenotyping/blob/master/codes.md
COVID coding resources
COVID-19 case definitions from CDC -
https://wwwn.cdc.gov/nndss/conditions/coronavirus-disease-2019-covid-19/case-definition/2020/
ICD-10-CM COVID-19 coding and reporting guidelines -
https://www.cdc.gov/nchs/data/icd/COVID-19-guidelines-final.pdf
CPT4 COVID-19 coding and guidance -
https://www.ama-assn.org/practice-management/cpt/covid-19-coding-and-guidance
LOINC COVID-19 Prerelease Terms -
https://loinc.org/prerelease/
N3C
N3C Phenotype & Data Acquisition Workstream -
https://github.com/National-COVID-Cohort-Collaborative/Phenotype_Data_Acquisition
Inclusion criteria for N3C CVOID-19 patients -
https://github.com/National-COVID-Cohort-Collaborative/Phenotype_Data_Acquisition/wiki/Latest-Phenotype