ACT-COVID-Ontology

The COVID-19 ontology that is deployed on the ACT network.

Publication

• Development of a Coronavirus Disease 2019 (COVID-19) Application Ontology for the Accrual to Clinical Trials (ACT) network https://academic.oup.com/jamiaopen/article/4/2/ooab036/6237901

ACT COVID resources

• ACT COVID ontology in i2b2 - http://dbmi-ncats-test01.dbmi.pitt.edu/webclient/ (login: demo / password: demouser)
• Inclusion criteria for ACT COVID cohort - https://github.com/shyamvis/covid-phenotyping/blob/master/inclusion-criteria.md
• Acceptance test queries - https://docs.google.com/spreadsheets/d/11LGtIdXAFoKMS0ARw4wjSK7VgmTyUiiemr3T8o0YfN4/edit#gid=692068358
• Google sheet for test sites - https://docs.google.com/spreadsheets/d/1gqDP6TBzweU23dwF9EPcmXHsfXtBwaHzprifHjSzEC8/edit#gid=0
• COVID-19 related codes (ICD-10-CM, CPT4, HCPCS, LOINC, etc.) - https://github.com/shyamvis/covid-phenotyping/blob/master/codes.md

COVID coding resources

• COVID-19 case definitions from CDC - https://wwwn.cdc.gov/nndss/conditions/coronavirus-disease-2019-covid-19/case-definition/2020/
• ICD-10-CM COVID-19 coding and reporting guidelines - https://www.cdc.gov/nchs/data/icd/COVID-19-guidelines-final.pdf
• CPT4 COVID-19 coding and guidance - https://www.ama-assn.org/practice-management/cpt/covid-19-coding-and-guidance
• LOINC COVID-19 Prerelease Terms - https://loinc.org/prerelease/

N3C

• N3C Phenotype & Data Acquisition Workstream - https://github.com/National-COVID-Cohort-Collaborative/Phenotype_Data_Acquisition
• Inclusion criteria for N3C CVOID-19 patients - https://github.com/National-COVID-Cohort-Collaborative/Phenotype_Data_Acquisition/wiki/Latest-Phenotype