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sib-swiss
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single-cell-training
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
https://sib-swiss.github.io/single-cell-training/
Creative Commons Attribution 4.0 International
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Error in validObject(.Object) : invalid class “LogMap” object: superclass "mMatrix" not defined in the environment of the object's class
#78
shameem356
closed
3 months ago
1
fixes wrong link in README
#77
GeertvanGeest
closed
3 months ago
0
https://sib-swiss.github.io/single-cell-training/latest/ is offline
#76
vmkalbskopf
closed
3 months ago
3
Updated discussion script day 3
#75
taniawyss
closed
5 months ago
0
Set up quarto to run as action
#74
GeertvanGeest
opened
5 months ago
0
minor updates DGE
#73
taniawyss
closed
5 months ago
0
Update monocl object creation
#72
taniawyss
closed
5 months ago
0
Remove trajectory slides
#71
taniawyss
closed
5 months ago
0
fixes #63
#70
GeertvanGeest
closed
9 months ago
0
58 do integration based on layers
#69
GeertvanGeest
closed
9 months ago
0
Update detailed schedule
#68
taniawyss
closed
9 months ago
0
update discussion day 3
#67
taniawyss
closed
9 months ago
1
Update scripts discussion day 2
#66
taniawyss
closed
9 months ago
0
Update slides of day3
#65
taniawyss
closed
9 months ago
0
updates monocle exercises with seuratv5, fixes #62
#64
GeertvanGeest
closed
9 months ago
0
Simplify pseudobulk analysis
#63
GeertvanGeest
closed
9 months ago
0
Trajectory analysis - Monocle3 update access to counts
#62
taniawyss
closed
9 months ago
0
updated discussion scripts
#61
taniawyss
closed
9 months ago
0
updates actions
#60
GeertvanGeest
closed
9 months ago
0
update Docker build and push actions
#59
GeertvanGeest
closed
9 months ago
0
Do integration based on layers
#58
GeertvanGeest
closed
9 months ago
1
new pdfs for presentations
#57
GeertvanGeest
closed
9 months ago
0
Update overview of class Seurat object with v5
#56
taniawyss
closed
5 months ago
1
AddModuleScore() needs a fix in Seurat v5
#55
taniawyss
closed
9 months ago
1
GetAssayData() slot argument deprecated
#54
taniawyss
closed
9 months ago
1
Re-organize DE slides
#53
taniawyss
closed
9 months ago
0
Update discussion scripts
#51
taniawyss
closed
1 year ago
0
Create a CITATION.cff
#50
GeertvanGeest
opened
1 year ago
0
Updates to DGE presentation
#49
taniawyss
closed
1 year ago
0
Bug monocle3 at step "cluster_cells"
#48
taniawyss
closed
9 months ago
2
Update link to OrgDbs in Day 3 - Enrichment analysis
#47
taniawyss
closed
1 year ago
0
Update links of day3 - Differential gene expression
#46
taniawyss
closed
1 year ago
0
Scaling all genes - necessary?
#45
GeertvanGeest
closed
1 year ago
1
Update discussion_day3.R
#43
taniawyss
closed
1 year ago
0
Package `org.Hs.eg.db` missing
#42
GeertvanGeest
closed
1 year ago
1
Package `Matrix` not in the right version
#41
GeertvanGeest
closed
1 year ago
2
Update discussion_day2.R
#40
taniawyss
closed
1 year ago
0
Add files via upload
#39
taniawyss
closed
1 year ago
0
Consider home work assignments
#38
GeertvanGeest
closed
1 year ago
1
Make a time schedule for the course
#37
GeertvanGeest
closed
1 year ago
1
Upload discussion scripts nov2022
#35
taniawyss
closed
1 year ago
0
typo in cell annotation exercise
#34
taniawyss
closed
1 year ago
0
IGKC is nice
#33
jeitziner
closed
1 year ago
5
edits_day1
#32
taniawyss
closed
1 year ago
0
Error message in LabelPoint
#31
jeitziner
closed
1 year ago
1
Running cellranger
#30
GeertvanGeest
closed
1 year ago
1
add regression out to scaling and normalization
#28
GeertvanGeest
closed
1 year ago
1
Moncole 3 part does not work well in hosted container
#27
GeertvanGeest
closed
1 year ago
1
add_discussion_day3
#26
taniawyss
closed
2 years ago
0
Monocle3 not installed
#25
GeertvanGeest
closed
1 year ago
2
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