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simon-anders
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htseq
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
https://htseq.readthedocs.io/en/release_0.11.1/
GNU General Public License v3.0
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Trouble installing HTSeq (python 3.5) on Mac
#60
Suzanne11
closed
6 years ago
1
HTSeq error with dexseq_count.py and Python 3
#59
mblue9
closed
6 years ago
6
Do not automatically add "[part]" or "revcomp_of_" to name when slicing a segment or using get_reverse_complement()
#58
woodword
closed
4 years ago
1
AttributeError, raised in _HTSeq.pyx:1358
#57
sentausa
closed
6 years ago
6
iv.chrom AttributeError
#56
maiher
closed
6 years ago
2
Install HTSeq with Conda on Windows
#55
afDeathscythe
closed
6 years ago
2
--nonunique all
#54
dws23
closed
6 years ago
5
add `check_sq` option `BAM_Reader`
#53
jbloom
closed
6 years ago
2
get_sam_line() error
#52
xkqqkx
closed
6 years ago
2
* in column 7 of sam is not recognized
#51
jtmieg
closed
6 years ago
6
GFF_Reader does not take unicode str
#50
jeremywzh
closed
6 years ago
1
Problem with utf-8 Unicode
#49
crikkia
closed
6 years ago
1
memmap_dir not passed on to ChromVector.create
#48
wkopp
closed
6 years ago
2
how to merge exons parts to actual exons?
#47
komalsrathi
closed
6 years ago
3
Passing memmap_dir on to ChromVector.create
#46
wkopp
closed
6 years ago
1
Flush output
#45
dcroote
closed
6 years ago
7
pysam api supporting
#44
lozybean
closed
6 years ago
4
Adding ability for using cores
#43
sdhutchins
closed
6 years ago
11
htseq-count Read claims to have an aligned mate which could not be found in an adjacent line.
#42
madzafv
closed
6 years ago
5
Install locally on CentOS
#41
madzafv
closed
7 years ago
2
How to perform exon level quantifications?
#40
komalsrathi
closed
7 years ago
2
htseq-0.9.1 :: make documentation broken due to doc beeing a link
#39
EricDeveaud
closed
7 years ago
1
download HTSeq in windows
#38
layal-khayal
closed
6 years ago
1
Issues with "Mate records missing" with position-sorted bam files
#37
mhibberd
closed
4 years ago
9
Can't import HTSeq with version 0.9.0
#36
nwaring1
closed
6 years ago
6
BAM_Reader Error: CIGAR code
#35
nwaring1
closed
7 years ago
2
htseq-qa AttributeError
#34
Libra66
closed
6 years ago
3
htseq-count: my_showwarning() takes from 3 to 5 positional arguments but X were given
#33
PeterParker1
closed
7 years ago
9
Error when iterating FastqReader(fastq.gz)
#32
Puriney
closed
7 years ago
2
Problem getting part of sequence
#31
osvaldoreisss
closed
7 years ago
6
pickling does not work
#30
mjoppich
closed
7 years ago
6
Pysam error
#29
davidecarnevali
closed
7 years ago
10
Iterating a FastaReader object MUCH slower using python 3.x
#28
mickaelsilva
closed
7 years ago
7
readthedocs broken by pysam
#27
iosonofabio
closed
7 years ago
1
SAM_Alignment : not_primary_alignment not taking flag 0x800 into account
#26
FrozenTux
closed
7 years ago
4
HTSeq: Failed to import 'numpy'. when building snap
#25
dmnfarrell
closed
7 years ago
3
New release including fix for qa script in Python 3?
#24
jrderuiter
closed
7 years ago
11
python 2 vs 3 behaviour
#23
dmnfarrell
closed
7 years ago
5
linting
#22
iosonofabio
closed
6 years ago
4
qa.py: Fix indentation
#21
saketkc
closed
7 years ago
1
releasing 0.7.0 on PyPI
#20
iosonofabio
closed
7 years ago
9
Proper setuptools command and logging in setup.py
#19
iosonofabio
closed
7 years ago
0
Move install to setup.py
#18
iosonofabio
closed
7 years ago
0
SAM file optional field B support
#17
iosonofabio
closed
7 years ago
0
Matplotlib >=1.5 uses Normalize, cover both cases for now
#16
iosonofabio
closed
7 years ago
0
Travis CI cleanup for python 3
#15
iosonofabio
closed
7 years ago
2
Travis CI cleanup for python2
#14
iosonofabio
closed
7 years ago
0
CI tidying-up
#13
iosonofabio
closed
7 years ago
9
Travis testing
#12
yhoogstrate
closed
7 years ago
1
Travis testing
#11
yhoogstrate
closed
7 years ago
0
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