simonhmartin twisst issues

simonhmartin / twisst

Topology weighting by iterative sampling of sub-trees

GNU General Public License v3.0

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issues

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'Ambiguous node name

#46 vrmyang closed 4 months ago
1
Recommendations for reducing tip number

#45 imaa9 opened 4 months ago
2
Viewing Rooted Topologies in R Code

#44 jbernst opened 11 months ago
3
apparent error in x-axis of Twisst plots

#43 dcmain closed 11 months ago
2
AssertionError: Please specify

#42 hyyuu opened 1 year ago
1
Versioned release package for Twisst

#41 jayramr opened 1 year ago
1
Any statistical methods to infer "significant" signals of introgression via local regions ?

#40 Callithrix-omics closed 1 year ago
2
Some strange results of topo weightings

#39 yokkkkl closed 1 year ago
2
Problem with import.twisst()

#38 weirdfanny opened 1 year ago
4
Issue with generating trees in PhyML

#37 declanjhoulihan closed 1 year ago
3
Dealing with missing data

#36 dcmain opened 1 year ago
2
unphased data

#35 linhai1221 opened 1 year ago
2
problem with plot.twisst

#34 CristianFRC closed 1 year ago
6
Error in l$window_data[[i]]$mid :

#33 lnqiaolouise opened 1 year ago
1
How to interpret the results(output.weights.csv)

#32 Galaxy-228 opened 2 years ago
3
problem in getting trees by running raxml_sliding_windows.py

#31 Niloofar-Alaei opened 2 years ago
5
Issue plotting TWISST results

#30 rancilhac opened 2 years ago
3
groups.tsv

#29 242652354 closed 2 years ago
0
How to set groups

#28 242652354 opened 2 years ago
1
take min/max values instead of first/last of seq function

#27 giyany opened 2 years ago
1
.....Warning - failed to read tree.

#26 liuxi1998 opened 2 years ago
1
Newick trees without predefined windows

#25 nela1911 opened 2 years ago
2
error while using phyml_sliding_windows.py "No module named 'genomics'

#24 Jungal10 closed 2 years ago
2
Per taxon sample size

#23 Matthew-Holding opened 3 years ago
2
Error getting twisst.py to run

#22 skitchen19 closed 3 years ago
1
Importance/impact of using phased data

#21 a-lud closed 3 years ago
3
error twisst: can not run twisst.py

#20 Andrinajoro closed 3 years ago
3
plotting specific regions within chromosomes

#19 sibelletorres closed 3 years ago
1
suggestion for plot.twisst in R with > 5 sp

#18 stubbsrl closed 2 years ago
6
About the numbers in the weights file

#17 mxg1987 closed 4 years ago
3
diploid species tree IDs

#16 shiyi-pan closed 4 years ago
2
Weight calculation fails mid-analysis

#15 TonyKess closed 3 years ago
2
Syntax Error line 663

#14 markscherz closed 4 years ago
3
How to deal with figure margins too large

#13 Wei-Gao-CAS opened 4 years ago
2
erro twisst_data_smooth

#12 Wei-Gao-CAS opened 4 years ago
12
IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices

#11 Wei-Gao-CAS closed 4 years ago
2
Analysis of topologies with low sample numbers

#10 evolgen closed 4 years ago
2
Plotting by chromosome

#9 jychoilab opened 5 years ago
2
Topology affected by order of group definition arguments

#8 vlkofly closed 5 years ago
6
is the 'lnL' in data.tsv.gz the likelihood ratio when building tree ?

#7 liuchang707 opened 5 years ago
1
Different number of tips per windows

#6 jdaron opened 5 years ago
1
Fatal error when writing weights file

#5 drdna opened 5 years ago
5
AssertionError: Named samples not present in tree.

#4 Burciny opened 6 years ago
1
Tutorial question

#3 owensgl opened 6 years ago
1
Problem with twisst output

#2 cbrock2 closed 6 years ago
4
ValueError: 'd223af7fbf34f5a5111bb1542d8b925c' is not in list

#1 stsmall opened 6 years ago
2