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sina-mansour
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UKB-connectomics
This repository will host scripts used to map structural and functional brain connectivity matrices for the UK biobank dataset.
https://www.biorxiv.org/content/10.1101/2023.03.10.532036v1
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Questions about the temporary_dir and output_dir
#43
OpsCharles
opened
2 months ago
0
Ask for the data used for constructing functional connectivity matrix
#42
hitrp
closed
9 months ago
1
Ask for the order of regions in pre-calculated structural connectivity matrix
#41
hitrp
opened
9 months ago
3
Readme landing page
#40
sina-mansour
closed
12 months ago
1
Including a more detailed list of software versions used.
#39
sina-mansour
closed
12 months ago
1
MRtrix3 code version
#38
Lestropie
closed
12 months ago
2
Documentation: Link to relevant MRtrix3 GitHub project
#37
Lestropie
closed
12 months ago
1
Remote storage options
#36
sina-mansour
closed
1 year ago
1
Total files quota
#35
sina-mansour
closed
2 years ago
1
Using spartan RAM disk
#34
sina-mansour
closed
2 years ago
2
Missing rotated bvecs
#33
sina-mansour
closed
2 years ago
3
5ttgen error on spartan
#32
sina-mansour
closed
2 years ago
4
Using crop_at_gmwmi
#31
sina-mansour
closed
2 years ago
2
tck2connectome
#30
AndrewZalesky
closed
12 months ago
6
tcksample 4D image input
#29
Lestropie
closed
12 months ago
0
tck2connectome unexpected mean output
#28
sina-mansour
closed
2 years ago
3
Strange multiplier in combined atlases
#27
sina-mansour
closed
2 years ago
1
SIFT2 processing "mask"
#26
Lestropie
closed
2 years ago
1
tcksample sampling strategy
#25
Lestropie
closed
2 years ago
2
SIFT2 weights
#24
sina-mansour
closed
2 years ago
18
Storage formats for exported intermediate data
#23
Lestropie
closed
2 years ago
1
Performing Connectome Spatial Smoothing
#22
sina-mansour
closed
12 months ago
2
Connectome mapping execution duration
#21
sina-mansour
closed
2 years ago
50
Combining cortical and subcortical atlases for SC mapping
#20
sina-mansour
closed
1 year ago
3
rigid linear transformations of atlases
#19
sina-mansour
closed
2 years ago
1
Multiple tractograms
#18
Lestropie
closed
2 years ago
7
reporting streamline termination stats
#17
AndrewZalesky
closed
2 years ago
7
tckgen streamline count + statistics reporting
#16
AndrewZalesky
closed
2 years ago
5
Tensor metrics from UKB vs computing
#15
sina-mansour
closed
2 years ago
10
MSMT CSD runtime
#14
sina-mansour
closed
2 years ago
5
FIRST file paths
#13
Lestropie
closed
2 years ago
1
Use rotated bvecs
#12
Lestropie
closed
2 years ago
1
UKB storage to upload processed bulk data
#11
sina-mansour
closed
12 months ago
3
Connectivity measures to be sampled
#10
sina-mansour
closed
2 years ago
14
Tractography pipeline (tckgen)
#9
sina-mansour
closed
2 years ago
3
Tractography along subcortex
#8
sina-mansour
closed
2 years ago
5
The alignment of the diffusion and structural MRI spaces
#7
sina-mansour
closed
2 years ago
26
5 tissue segmentation approach
#6
sina-mansour
closed
2 years ago
7
Adding mtnormalise
#5
sina-mansour
closed
2 years ago
1
Mask dilation before running CSD
#4
sina-mansour
closed
2 years ago
3
Group average response function
#3
sina-mansour
closed
2 years ago
5
Scratch file system usage
#2
sina-mansour
closed
2 years ago
2
MRtrix3 python API
#1
sina-mansour
closed
2 years ago
2